Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq157162 163 4e-35 seq128143 149 9e-31 seq183117 100 4e-16 >seq157162 Length=2207 Score = 163 bits (180), Expect = 4e-35 Identities = 179/238 (75%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 124533 AATACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAA 124592 || ||||||||||| || | || |||||||| ||||| || || ||| | ||| | || Sbjct 383 AACACAATGCAAATTTTCGTTAAAACACTAACTGGCAAGACCATCACTTTGGAGGTCGAG 442 Query 124593 GCAAATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCT 124652 || || || ||| ||| | ||| |||||||| |||||||||||||| ||||| Sbjct 443 CCATCGGACACCATTGAAAATGTCAAAGCTAAAATTCAGGATAAAGAAGGTATCCCACCA 502 Query 124653 GATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGAT 124712 ||||||||| | || ||||| || || |||||||| || ||| | || || || || Sbjct 503 GATCAACAACGTCTAATTTTCGCCGGCAAACAATTGGAAGATGGACGTACTCTATCCGAC 562 Query 124713 TATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTA 124770 || ||||| ||||| |||||||| | |||||||| || ||| |||| |||||||||| Sbjct 563 TACAATATCCAAAAGGAATCAACACTTCATTTGGTATTGCGTCTACGTGGTGGTATTA 620 >seq128143 Length=5596 Score = 149 bits (164), Expect = 9e-31 Identities = 345/518 (67%), Gaps = 9/518 (2%) Strand=Plus/Plus Query 205444 GTTAAATGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTACACCT 205503 |||| |||||||||||| ||||| | | | ||| ||||| ||| ||||| ||||| Sbjct 1251 GTTATATGTGCAATCATGTAAGTAAGCAGAGCATAGGAAGCAATATTGAATGGCACACCC 1310 Query 205504 AAACCCATATCAGCTGATCTTTGATACATTTGACATGTAAGATATTTATTATTAATTACA 205563 ||||||||||| || | ||| || | |||||||| || | || || | | Sbjct 1311 AAACCCATATCGGCGCTACGTTGGTATAATTGACATGATAGCTCACCGTTGGCAACGAAA 1370 Query 205564 TGAAATTGTACAAAACAATGACAAGGTGGTATAACCATATTTTCAACATCTATAGGATTC 205623 ||||| | | ||||||||| ||||||| |||| | | | ||| | ||||||| Sbjct 1371 ---AATTGCGCCAGACAATGACATGGTGGTAATGCCATTTGTGGTATATCAACAGGATTC 1427 Query 205624 CAGGCTGTTAATATTATATTTCTAGATTCAGGtttattttttattttatttatAATATGT 205683 || || | | ||| || || | | || ||||| ||| ||| |||| ||| Sbjct 1428 CATGCAGACATTATGATGCGTCGATCATTTGGATTATTACGGATTGTATCAATAACTTGT 1487 Query 205684 GTTAATTGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAAT---ATATTTAGCA 205740 |||| |||||| | || | | | | || || |||| | | | |||||| | Sbjct 1488 GTTAGTTGATCTATGCCCTCACCTTTGTAGTT---ATCCTTGCAAGTGCGATATTTTGAT 1544 Query 205741 CCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTTTTCTATCATTA 205800 || |||||||||||||||||||||||||||||||||||||| ||||| | | || | Sbjct 1545 CCGAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCGCCTTCCTCACGTTCCACA 1604 Query 205801 AAACCACGtttttttatatattttaatgatccattttcatcccaaatatggattccttta 205860 ||||||| ||| | || ||| | |||| | ||||| || || || ||| Sbjct 1605 AAACCACATTTATCTAGGAATTCCCGGCTACTATTTCCGTCCCATATGTGAATATTCTTA 1664 Query 205861 ttttttaGAATATTTGTATTAGTTGATCCAGATATAAACCATAATAATTCTTCAACAATT 205920 | || || | || | | ||| ||| || |||||| | ||||||||| ||| Sbjct 1665 TCTTGCAGCAATTTAGAGTCGGTTTGGCCATGTACAAACCAAAGTAATTCTTCGGCAACA 1724 Query 205921 CCTCTCCAAAACATTGATTTTGTTGTAAATAATGGAAA 205958 |||||||||| | | |||||| || ||||| || || Sbjct 1725 GCTCTCCAAAATACTCGTTTTGTGGTTAATAAAGGGAA 1762 >seq183117 Length=3786 Score = 100 bits (110), Expect = 4e-16 Identities = 216/323 (67%), Gaps = 4/323 (1%) Strand=Plus/Plus Query 205319 tttttatttttaatt----ttGGAAATGGGTTTGGTGTACGTTCTAATTGtttttttAAT 205374 |||||||| ||| | |||| |||| |||||| | | |||||||| || | | Sbjct 2774 TTTTTATTAATAACTAAAATTGGCAATGATTTTGGTTTTCTACTTAATTGTTCATTAATT 2833 Query 205375 CCATTAATATGATTAACATATATATGTGCATTACCAATATTATGAATAAATTCATATGGT 205434 || ||||||| ||| ||||| |||| ||| | | ||||||||||||| | | Sbjct 2834 TGTGAAAAATGATTACTATAAATATGAGCATCACCTAAAGTATGAATAAATTCTCCTAGC 2893 Query 205435 TTTAAATTAGTTAAATGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAAT 205494 | | | || ||||| | ||| || ||||| |||| ||||| |||||| Sbjct 2894 TGATAGCCACATATTTGTGCTAACATTATTGTTAATAATGCATAAGAAGCAATATTAAAA 2953 Query 205495 GGTACACCTAAACCCATATCAGCTGATCTTTGATACATTTGACATGTAAGATATTTATTA 205554 || || |||||| ||||| || | |||||| | |||||| | | | ||||| | Sbjct 2954 GGAACTCCTAAAAAAATATCTGCACTACGTTGATATAATTGACAAGATAATTTTTTATCA 3013 Query 205555 TTAATTACATGAAATTGTACAAAACAATGACAAGGTGGTATAACCATATTTTCAACATCT 205614 | | || | |||||| | ||| |||||| ||||||| ||||||||| || ||| Sbjct 3014 TCAGAAACGTAAAATTGAATTAAAGTATGACATGGTGGTAGTGCCATATTTTTAATTTCT 3073 Query 205615 ATAGGATTCCAGGCTGTTAATAT 205637 |||||| || |||| ||| || Sbjct 3074 GCAGGATTTCATGCTGATAAAAT 3096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 753725108656000