Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq66438 250 2e-61 >seq66438 Length=2923 Score = 250 bits (276), Expect = 2e-61 Identities = 483/706 (68%), Gaps = 23/706 (3%) Strand=Plus/Plus Query 16069 ATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTAAC 16128 ||||||||||||||| ||||| | ||||| | ||| ||||| || || || || || Sbjct 909 ATCCGCCACAAATTCAATATAATCCGACATTAGCTTACAATTCATGCCAATCAAATTCAC 968 Query 16129 AGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATATCTCT 16188 || | || |||||||| || | || ||| || |||||||| ||| || || || | Sbjct 969 TGGCAAAGCATCTGTTAAGAATTCTTGTTCAATTTTAACCGCCTCAGCAATGATTTCAAT 1028 Query 16189 TACTACACTATTTAA-CGGAGGGTTTAATAAGTGTTTAAACATTATACAAGCAAAATCAC 16247 | ||| || || ||| | || || |||| ||||| | |||||||||||||| Sbjct 1029 AA-TACGCTCCCTACTCGGCTTCTGTACCAAATGTTGGAACATCAGACAAGCAAAATCAC 1087 Query 16248 AATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTC 16307 |||| || ||||| || | |||| ||| || || ||||| | || |||||||| | Sbjct 1088 AATGTAAACCTTCATCACGCGAGATTAGCTCATTGGAGAATGTCAAGCCGGGCATTAGAC 1147 Query 16308 CTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTG 16367 | |||||||| | |||||| || | ||||| ||| ||||||||| |||||||| | Sbjct 1148 CACGTTTTTTCAACCAAAAGATCGAAGCAAAACTACCGCTAAAGAATATGCCTTCAACGG 1207 Query 16368 CGGCAAATGCAACCAATCGCTCACCGTACGT--TCTAtttttactttctatccatttttt 16425 | |||||||||| | || ||||| | | | |||| | | |||||| | Sbjct 1208 CAGCAAATGCAATGACACGTTCACCAAAATTAGCCGCTTTTGA--TGAGATCCATGCTAG 1265 Query 16426 agcccaatttgctttttgtttAAC-ACAGTTCATGTTCTCTATTGCATTAAATAAATAAt 16484 ||||||| || || | ||||| ||| || | || || |||||||||| Sbjct 1266 TGCCCAATCAGCCTTACGCTTAACGGCAG-GGATCGTTTCAATAGCATTAAATA------ 1318 Query 16485 ttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAA 16544 || | ||| ||| || ||||| || || | ||||||||||||||||| | Sbjct 1319 -------NTTTCCATCCTTAATGTAGGTATCAATAAGAATGCTATACATTTCTGAATGCA 1371 Query 16545 TATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC-A 16603 ||| ||||||||||| ||||| ||||||||||| | ||||||| ||||||||||| Sbjct 1372 CATTTTCCATTGCTATTTGAAAGCCATAAAAGCAACGTGCTTCGGTAATTTGTACTTCTT 1431 Query 16604 GAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCA 16663 || | ||| | ||| ||| ||||| ||||| || |||||| || || || || || Sbjct 1432 GACTGAAA-CGTTCAACTAGATTTTCATTAACAATACCATCGGAGGCGGCGAAGAAAGCT 1490 Query 16664 AGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAACCAGTCAGAAAAATCT 16723 | | |||| | |||| ||| || || | ||| || ||| || | ||| Sbjct 1491 AAAACGTGTGATACGAAATGACGTTCATTGTCGGTAAGACGTACCCAATCGTCCATGTCT 1550 Query 16724 TTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCT 16769 || || | ||| ||||||||||| |||||||| || || | |||| Sbjct 1551 TTGGAGAGATCAACCTCTTCTACGGTCCAAAAGGATGCTTCGGCCT 1596 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 ||||||||||| || | | || |||||||| | ||||| |||| | || Sbjct 637 TTTAAAAATCAGCGTCCAACGTGAAGACATTATCCATACGATTTGTGGTAACGCCCCATT 696 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 |||| ||||||| ||| |||||||||||||||| ||||| || |||||||| || | Sbjct 697 TTTGGTATTCACCCACTTTCTTTTCAAAGAAATTCGTTTTGCCATCTAATGAGATGAGCT 756 Query 16005 CCATAAAATCAAAAGGATTTTTTG 16028 |||||||| || ||||||| || Sbjct 757 CCATAAAACTGAATGGATTTTGTG 780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461452298287000