Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq128143 161 8e-35 >seq128143 Length=5596 Score = 161 bits (178), Expect = 8e-35 Identities = 478/733 (65%), Gaps = 3/733 (0%) Strand=Plus/Minus Query 20045 TTCCCTT-ATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAGTTATTATGG 20103 ||||||| |||||| || ||||| |||||||||| || |||| ||||| ||| | ||| Sbjct 1762 TTCCCTTTATTAACCACAAAACGAGTATTTTGGAGAGCTGTTGCCGAAGAATTACTTTGG 1703 Query 20104 TTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAGTTAAGATTTGGAGC 20163 ||| | | || ||| | |||| ||| ||| || || | || ||| | Sbjct 1702 TTTGTACATGGCCAAACCGACTCTAAATTGCTGCAAGATAAGAATATTCACATATGGGAC 1643 Query 20164 GCACATGGATCTAAGCAATTTTTACACAGCAATGGATTTGACAACCGTCAAGAGGGGGAT 20223 | | || | | |||| || | | ||| |||| | ||| | || || ||| Sbjct 1642 GGAAATAGTAGCCGGGAATTCCTAGATAAATGTGGTTTTGTGGAACGTGAGGAAGGCGAT 1583 Query 20224 TTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGACATGAAC 20283 || ||||| || ||||| ||||||||| | ||||| ||| | ||||| || || | Sbjct 1582 TTAGGTCCAGTTTATGGTTTTCAATGGCGTCATTTCGGATCAAAATATCGC-ACTTGCAA 1524 Query 20284 ACA-AATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATTAAAAC 20342 | || || || | || |||||||| || | | |||||| || ||| | Sbjct 1523 GGATAACTACAAAGGTGAGGGCATAGATCAACTAACACAAGTTATTGATACAATCCGTAA 1464 Query 20343 GAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCTTTAAT 20402 || ||||| || || | || || | | || ||||| || ||| | || ||| Sbjct 1463 TAATCCAAATGATCGACGCATCATAATGTCTGCATGGAATCCTGTTGATATACCACAAAT 1404 Query 20403 GGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGAATTGTCGTG 20462 ||| || || ||||||||| || ||||||| |||||| || ||| | || || Sbjct 1403 GGCATTACCACCATGTCATTGTCTGGCGCAATTTTTCGTTGCCAACGGTGAGCTATCATG 1344 Query 20463 TCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCAAGTTA 20522 |||| | || ||||| ||| |||||||| ||||||| || ||||||||||| || Sbjct 1343 TCAATTATACCAACGTAGCGCCGATATGGGTTTGGGTGTGCCATTCAATATTGCTTCCTA 1284 Query 20523 TGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGGTGACTTAGTCCA 20582 ||| |||||||| || |||||||||||| | |||| | | || ||||| || || Sbjct 1283 TGCTCTGCTTACTTACATGATTGCACATATAACAGGACTTCGGCCTGGAGACTTTGTTCA 1224 Query 20583 CACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACCTTTAAAATTACAGTTAAC 20642 || | || || ||||| | || | ||| || || || | || ||| ||| Sbjct 1223 TACTTTGGGCGATACGCATGTCTATAAAAGTCACATTGAGCCACTGAAGGAACAATTATT 1164 Query 20643 ACGACAACCAAAACAATTCCCAACTCTTCGCATTACTCGAACTGTTAAAGATATTAACGA 20702 |||| | ||| | |||||| | || |||| ||| ||| ||| ||||| | || Sbjct 1163 ACGAAAGCCACGCCCATTCCCGAAACTAACTATTAAGCGAGATGTGAAAAATATTGAAGA 1104 Query 20703 TTTTAAAGCTGATGATTTTGTGTTAGAAGGTTATAATCCCCATAATTCAATTCCAATGGA 20762 ||||||| |||||||||| | | | || || || || | ||| | ||||| Sbjct 1103 TTTTAAATTCGATGATTTTGAAATTGTTGACTACAAACCGTATCCTAAAATAGCCATGGA 1044 Query 20763 AATGTCTGTTTAA 20775 |||| |||||||| Sbjct 1043 AATGGCTGTTTAA 1031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398292259743775