Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq66438 199 4e-46 >seq66438 Length=2923 Score = 199 bits (220), Expect = 4e-46 Identities = 399/586 (68%), Gaps = 17/586 (3%) Strand=Plus/Plus Query 14030 AGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATT 14089 || || | |||||| | || |||||||| | ||||||| | ||||||||| || || Sbjct 901 AGCAAGCGATCCGCCACAAATTCAATATAATCCGACATTAGCTTACAATTCATGCCAATC 960 Query 14090 AGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATA 14149 | || || || | || ||||| ||||||| ||| || || ||||| || Sbjct 961 AAATTCACTGGCAAAGCATCTGTTAAGAATTCTTGTTCAATTTTAACCGCCTCAGCAATG 1020 Query 14150 ATAATCGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCA 14209 || ||||| || || || | | | ||||| || || | ||| ||| Sbjct 1021 ATTTCAATAATACGCTCCCTACTCGGCTTCTGTACCAAATGTTGGAACATCAGACAAGCA 1080 Query 14210 AAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGC 14269 ||||||||||| | || ||||| | || || || || || ||||| || || ||| Sbjct 1081 AAATCACAATGTAAACCTTCATCACGCGAGATTAGCTCATTGGAGAATGTCAAGCCGGGC 1140 Query 14270 ATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCC 14329 || | || |||||||| |||||||| || | ||| || ||| ||||||||| || Sbjct 1141 ATTAGACCACGTTTTTTCAACCAAAAGATCGAAGCAAAACTACCGCTAAAGAATATGCCT 1200 Query 14330 TCAACTGCAGCAAACGCTATTAATCGTTCTCC-AAACGATGCTTTTTTGTTCGATATCCA 14388 ||||| |||||||| || || | ||||| || ||| | | ||||| | || ||||| Sbjct 1201 TCAACGGCAGCAAATGCAATGACACGTTCACCAAAATTAGCCGCTTTTGAT-GAGATCCA 1259 Query 14389 TTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAA 14448 | | ||||| |||| || |||| | || |||||||||||||||||| Sbjct 1260 TGCTAGTGCCCAATCAGCCTTACGCTTAACGGCAGGGATCGTTTCAATAGCATTAAAT-- 1317 Query 14449 ATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGA 14508 | |||| || ||| |||||| ||||||||||| | |||||||||||| || Sbjct 1318 ANTTTCCATC-CTT----------AATGTAGGTATCAATAAGAATGCTATACATTTCTGA 1366 Query 14509 GTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTAC 14568 || | |||||||| ||||| ||||| |||||||| || | ||||| | |||||| Sbjct 1367 ATGCACATTTTCCATTGCTATTTGAAAGCCATAAAAGCAACGTGCTTCGGTAATTTGTAC 1426 Query 14569 CTC-TGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATC 14613 || ||| | ||| | ||| | | |||||||||||| |||||||| Sbjct 1427 TTCTTGACTGAAA-CGTTCAACTAGATTTTCATTAACAATACCATC 1471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 481240455790600