Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq157162 122 7e-23 >seq157162 Length=2207 Score = 122 bits (134), Expect = 7e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || ||||| | | ||||| |||||||||||||| ||||| || |||||||||| Sbjct 615 CCACCACGTAGACGCAATACCAAATGAAGTGTTGATTCCTTTTGGATATTGTAGTCGGAT 556 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||||||||||||||| || | || || | ||||||||| || Sbjct 555 AGAGTACGTCCATCTTCCAATTGTTTGCCGGCGAAAATTAGACGTTGTTGATCTGGTGGG 496 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTT-GACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||| ||||| ||||| | |||| ||| | | ||| ||||| |||||| Sbjct 495 ATACCTTCTTTATCCTGAATTT-TAGCTTTGACATTTTCAATGGTGTCCGATGGCTCGAC 437 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || | |||||| | ||||| || | |||||| || |||||||||||| Sbjct 436 CTCCAAAGTGATGGTCTTGCCAGTTAGTGTTTTAACGAAAATTTGCATT 388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 378496580474775