Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq114852 457 8e-124 seq66438 219 4e-52 seq157162 113 4e-20 >seq114852 Length=3422 Score = 457 bits (506), Expect = 8e-124 Identities = 1252/1903 (66%), Gaps = 37/1903 (2%) Strand=Plus/Plus Query 22106 TTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCC 22165 || || |||||||| ||||| || ||||| || |||||||| || | |||||||||||| Sbjct 826 TTATCAACTGTAAATTGTATAGCATTTGCAGCTGGTTTGGTACGTAAATAATACATGCCA 885 Query 22166 GTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGG- 22224 || || || ||| ||||| | |||| ||||| || || | ||| ||||| | || Sbjct 886 GTTTTGAGCCCCGCTTTCCAACCAAAAAAGTGTATAGATGTAAGTTTGCCATAGTTTGGT 945 Query 22225 -CAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGG 22283 || | |||| | | || ||||| || || ||||| ||||| || || |||||||| | Sbjct 946 TCAGCTACATGAATA--TTAAACGATTGGCTTTGATCAATAAATGCGCCACGATCGGCTG 1003 Query 22284 CCATATTTATCAATGTACGCAT---CGACATTTCCCATACGGTCTTGTACAGTTGCCTGA 22340 |||| || || |||| | | ||| || ||||| || |||||||| |||| | | Sbjct 1004 CCATCTTCAT---TGTAGTCTTTACCGATATCTCCCACACAGTCTTGTAAAGTTCACGTA 1060 Query 22341 TCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTT 22400 | | | |||||| | ||| || | || | || || | || ||| || | ||| Sbjct 1061 TTTTTTGCGGTATTGTTTCAATACCTTGTATTGAACCACGACTGGTTATAATTTTAGTTT 1120 Query 22401 TAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCA 22460 | || ||| | ||||||||| | |||| | ||| | || |||| | || || | Sbjct 1121 TCATTTCATCATCCCACAAACCCAATTCGGTAAGATCGCGTAACAAATGATGATTAACAA 1180 Query 22461 CTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAG 22520 ||||||| || || || | ||||| || | ||||| || || || | ||||| |||| Sbjct 1181 CTTGAAATTCACCCGATAGTACGCGACGATTATAAATATTTGAAGTATAAGGTTCAAAAG 1240 Query 22521 ATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCG 22580 |||||||||| |||| || ||||| || || || || ||||| || ||||| |||| | Sbjct 1241 ATTCATTGTTGCCCATAATTTGAGCAGTTGATGCAGTAGGCATGGGTGCCAAAAGTAAGG 1300 Query 22581 AGTTTCTCAAGCCGTGCTTTGAAATTTTACTC-TTGAGCATCGACCAGTCCCACAGATCG 22639 |||| | | ||| |||| ||||| ||| || | | | ||||||||| |||||| Sbjct 1301 AGTTGCGTACGCCATGCTGCTTTATTTT-CTCTTTCAATACAGTCCAGTCCCATAGATCG 1359 Query 22640 GACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCT 22699 | || | || | ||||||||| ||||| | | || || | || |||| Sbjct 1360 GTTGGTTT---TTTATTCCACATATCATATTGGAGTATACCTTTGCTAACAGGTGAGCCT 1416 Query 22700 TCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCG 22759 ||||| ||||| || | ||||||| | | || | ||| || || || ||||| ||||| Sbjct 1417 TCGTATGTTTCATAAGTACCATATTTTTCAGCCAATTCACAACTAGCTTCCAATGCGCCA 1476 Query 22760 TAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTTTCGTACGGC 22819 || || || || ||||| |||| | ||||| || || |||| ||||| || Sbjct 1477 TAGTACATTGTTTCGAAAATTTGTTGATTCAAGAGTGCAGCCTGCTCGCTCTCGTATGGG 1536 Query 22820 ATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTT 22879 |||||| | | || || || || | ||| || ||||| |||||||| || || | | Sbjct 1537 TAACGCATAAGGATTAAAGCATCTGCAAAACCTTGTACGCCAATACCGATGGGGCGATGT 1596 Query 22880 TTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTC 22939 | | || || |||| |||||||| ||||| |||| ||||| || | || Sbjct 1597 CTGAAGTTTGATTTCTTTGTTTCGGGCAATGGATAATGATTCACTTCGATAATTTTATTT 1656 Query 22940 AAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTA--AACGCCCG 22997 | || | || || | || || | | || ||||| | || Sbjct 1657 AGATTACGCGTTACGGTCTTGGTAACTTCTTTTAAGCGTTTGAAATCGTATGACTTTTCG 1716 Query 22998 ATTGTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTT 23057 ||| ||||||| | || | || ||||| || | ||| || || || || || || Sbjct 1717 GGTGT--AACAAACATATTTAGCGCAATCGATGCTAAATTACAAACAGCTACTTCATCCG 1774 Query 23058 TGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGC 23117 | | ||||| |||||||| || |||| ||| ||||| || || ||||| | ||| Sbjct 1775 GTGCTGAATACTCAACAATTTCTGTGCATAAATTACTACATTTAATGGTGCCAACATTTT 1834 Query 23118 TCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGA 23177 || || || || ||||| || | ||||||||| |||||||| || ||||| ||||| | Sbjct 1835 GTTGATTACTCTTCCGATTACATGCATCCTTGTACAGCATGTATGGTGTGCCGGTCTCTA 1894 Query 23178 CCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTAC-CTG 23236 | ||||| || || || || ||| | | | || || | || ||| | | | Sbjct 1895 CTTGCGATTCAATAATAGCAAACCAAAGACTTTGTGCTTTCAC-TGTCTTATTAGCGCGT 1953 Query 23237 CCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGG 23296 || |||| ||| || || || || || || || |||| | || ||| Sbjct 1954 CCCTCTTGCTCATATTTAGTATATAATTGTTCGAACTCATCACCCCATACCTCATGCAGA 2013 Query 23297 CCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATT---TTCAACGCGTCTC 23353 || || | | || ||||| || ||| || ||||| |||||| ||| || Sbjct 2014 CCAGGACACTTGTGAGGGCACATCAGCGACCA-AT--CTTCATTAGCTTCAACACGTTTC 2070 Query 23354 ATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTG 23413 ||||||||||| |||||||||| ||| || || | || | || || || || ||| Sbjct 2071 ATAAAAAGATCTGGTATCCATAAAGCATAAAATAAATCTCTAGCACGATGTTCTTCCTTG 2130 Query 23414 CCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAA 23473 || ||||| || || ||||||||||| || || || || |||||||| || || | || Sbjct 2131 CCAGTGTTTTTCTTTAAATCCAAAAACTCAAATACATCTGCATGCCATGGTTCTAAATAG 2190 Query 23474 ACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTG 23533 | ||||||||||| || | ||| ||||||||||| || ||||| ||| || ||| Sbjct 2191 ATTGCAAACGCGCCAGGACGTTTACCACCGCCCTGATCTACATAACGTGCCACATTATTG 2250 Query 23534 TACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAA 23593 | ||||| | ||| || || | ||| || || | ||| | || || | || Sbjct 2251 AATACTCTCAACATTGGTACCAAACCATTCGATGTGCCATTTGTACCGGCAATTGCCGTG 2310 Query 23594 CCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATC 23653 ||| | || || | || || | || || || || || | ||||| || || | Sbjct 2311 CCTCTAGCGCGTATACAATGTACATTGAGTCCAATACCACCAGCTGATTTGGAAATTAAT 2370 Query 23654 GCGCATTG--TTTCAGAGTGTCGTAGATGCCCTCGAT---GCTGTCCTCTTTGGTCGCGA 23708 || ||||| | | || || | | ||||| || || | | | | ||| || Sbjct 2371 GCACATTGATGTGCTGA-AGT-GAATATGCCATCAATCGAATCGGCGACCATTGTCAAGA 2428 Query 23709 CCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGG 23768 ||| || || || | ||| | | || ||||| | ||||||||| || | Sbjct 2429 GAAAG---CAAGATGATAGTTGTGGCTGCCTTGTTGCGGCAGCGAACAGTGTTGGTGAAG 2485 Query 23769 CGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCT 23828 | |||||||| || | | || | || |||||| || |||||||| ||||| || |||| Sbjct 2486 CATGCGTAAAATAACGTTCTGAAAGTAAATTGTATGTTTCGATGGCTGCATCTATATCCT 2545 Query 23829 CTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGC 23888 | || |||||||| ||||| || ||||| | ||| | || || | ||| || | || Sbjct 2546 CGCCATGTATACCAATGGCAACACGCATTAACATATGCTGTGGACGCTCAACAATTTTGC 2605 Query 23889 CGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAA 23948 | || | | ||| | || ||||||| || ||||||||| |||||||| | ||| || Sbjct 2606 CATTTAATCTGAGTAAGTAAGAACGTTCCAGCGTTTTAAAACCAAAATAATTATAACCAA 2665 Query 23949 AGTCACGATCGTGCACTATGGCCGAATTCAAACGGTACGCATT 23991 |||||||||| | | || || ||||| || || | ||||| Sbjct 2666 AGTCACGATCATATATAATAGCTGAATTTAAGCGATCAGCATT 2708 >seq66438 Length=2923 Score = 219 bits (242), Expect = 4e-52 Identities = 477/712 (67%), Gaps = 37/712 (5%) Strand=Plus/Minus Query 57589 AGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATT 57648 |||| |||||||| ||||||||||| ||||| || || || || || || || ||||| Sbjct 1596 AGGCCGAAGCATCCTTTTGGACCGTAGAAGAGGTTGATCTCTCCAAAGACATGGACGATT 1537 Query 57649 GGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCG 57708 ||| || | || ||| | |||| | |||||| || || || ||||||| Sbjct 1536 GGGTACGTCTTACCGACAATGAACGTCATTTCGTATCACACGTTTTAGCTTTCTTCGCCG 1477 Query 57709 CATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCA--CAAGAAGTGCAAGT 57766 | ||||||||||||||||| || ||| | || ||| | ||||| |||||||| ||| | Sbjct 1476 CCTCCGATGGTATTGTTAATGAAAATCTAGTTGAACG--TTTCAGTCAAGAAGTACAAAT 1419 Query 57767 GACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAAT 57826 || || || | |||||||| || |||||| | || || ||||| |||||||||||||| Sbjct 1418 TACCGAAGCACGTTGCTTTTATGGCTTTCAAATAGCAATGGAAAATGTGCATTCAGAAAT 1359 Query 57827 GTATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAAACGTAGACTGTTCAA 57886 |||| | || || ||||| ||| | |||| | | | | | || || Sbjct 1358 GTATAGCATTCTTATTGATACCTACATTAAGG-------------ATGGAAANTATTTAA 1312 Query 57887 CGCGATCGAAACAATGCCCGCGATCGCCAAG---AAGGCAGAGTGGTCAATCAAATGG-- 57941 || || ||||| || || || || ||| ||||| || ||| || | |||| Sbjct 1311 TGCTATTGAAACGATCCCTGC---CGTTAAGCGTAAGGCTGATTGGGCACTAGCATGGAT 1255 Query 57942 ---ATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAA 57998 || ||||| |||| | || | || | | || || || || ||||| ||| Sbjct 1254 CTCATCAAAAG-----CGGCTAATTTTGGTGAACGTGTCATTGCATTTGCTGCCGTTGAA 1200 Query 57999 GGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATG 58058 || ||||||||| || || ||||| | || |||||| |||| ||||| || || ||| Sbjct 1199 GGCATATTCTTTAGCGGTAGTTTTGCTTCGATCTTTTGGTTGAAAAAACGTGGTCTAATG 1140 Query 58059 CCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTT 58118 |||||| |||| || ||| ||| | || ||||| || || ||| | ||| ||||||| Sbjct 1139 CCCGGCTTGACATTCTCCAATGAGCTAATCTCGCGTGATGAAGGTTTACATTGTGATTTT 1080 Query 58119 GCGTGCCTAATGTACTCTCACATT--GTCAATAAACCGACGCGGGATCGCATCTTGGACA 58176 || || || |||| || ||||| || | || |||| |||| || || | || | Sbjct 1079 GCTTGTCTGATGT--TCCAACATTTGGTACAGAAGCCGAGTAGGGAGCGTATTATTGAAA 1022 Query 58177 TTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCA 58236 | || | |||||||| || ||| | || || | || || || | || ||| Sbjct 1021 TCATTGCTGAGGCGGTTAAAATTGAACAAGAATTCTTAACAGATGCTTTGCCAGTGAATT 962 Query 58237 TGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGA 58288 || | || ||||| | | | ||||| | || ||||| ||||| || || Sbjct 961 TGATTGGCATGAATTGTAAGCTAATGTCGGATTATATTGAATTTGTGGCGGA 910 >seq157162 Length=2207 Score = 113 bits (124), Expect = 4e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| || || || || ||||| || ||||| | || || || || || Sbjct 389 ATGCAAATTTTCGTTAAAACACTAACTGGCAAGACCATCACTTTGGAGGTCGAGCCATCG 448 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| |||||| | ||| ||| || ||||| | || || || || Sbjct 449 GACACCATTGAAAATGTCAAAGCTAAAATTCAGGATAAAGAAGGTATCCCACCAGATCAA 508 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 || |||||||| ||||| |||||||| |||||||| | | | ||| | ||| || || Sbjct 509 CAACGTCTAATTTTCGCCGGCAAACAATTGGAAGA-TGGACGTACTCTATCCGACTACAA 567 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTA 31402 || ||||| ||||| || |||||| ||||| Sbjct 568 TATCCAAAAGGAATCAACACTTCATTTGGTA 598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444745065596400