Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq66438 118 2e-21 seq128143 98.7 2e-15 seq114852 91.5 3e-13 >seq66438 Length=2923 Score = 118 bits (130), Expect = 2e-21 Identities = 215/314 (68%), Gaps = 3/314 (1%) Strand=Plus/Minus Query 101919 TTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGGA 101978 |||| |||||||| |||||||| || |||||||| ||| || || || || || ||| Sbjct 1219 TTGCATTTGCTGCCGTTGAAGGCATATTCTTTAGCGGTAGTTTTGCTTCGATCTTTTGGT 1160 Query 101979 TCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGACG 102038 | || || | ||| | |||| || | || | |||||||||| | || || | || | Sbjct 1159 TGAAAAAACGTGGTCTAATGCCCGGCTTGACATTCTCCAATGAGCTAATCTCGCGTGATG 1100 Query 102039 AAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCAT 102098 ||||| | ||| | || ||||| || || |||| || | ||| || | | || Sbjct 1099 AAGGTTTACATTGTGATTTTGCTTGTCTGATGTTCCAACA---TTTGGTACAGAAGCCGA 1043 Query 102099 CAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTCTCA 102158 || || | ||| ||||||| | |||| || || ||||||||||||||| | | Sbjct 1042 GTAGGGAGCGTATTATTGAAATCATTGCTGAGGCGGTTAAAATTGAACAAGAATTCTTAA 983 Query 102159 CAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACATTG 102218 ||| | | |||| || || || | || ||||| || ||| | ||| | || |||| Sbjct 982 CAGATGCTTTGCCAGTGAATTTGATTGGCATGAATTGTAAGCTAATGTCGGATTATATTG 923 Query 102219 AATTTGTGGCAGAT 102232 |||||||||| ||| Sbjct 922 AATTTGTGGCGGAT 909 >seq128143 Length=5596 Score = 98.7 bits (108), Expect = 2e-15 Identities = 412/638 (65%), Gaps = 13/638 (2%) Strand=Plus/Minus Query 35168 GGAACTCTATCCATTTTTGGACCCCAAATGAGGTTCTCTCTTCGAGACGACACTATTCCA 35227 ||||| ||| |||||||| | |||||||| ||| |||| ||| | || | || Sbjct 1813 GGAACCAGATCAATTTTTGGTGCGCAAATGAGATTCGATCTT--AGAAGTAGCT-TCCCT 1757 Query 35228 GTTCTCACTACCAAGAAAATTTTCTGGAGAGGAGTTGTGGAAGAACTCTCGTGGTTCAT- 35286 | | || || || | | || ||||||| |||| |||||| | ||||| | Sbjct 1756 TTATTAACCACAAAACGAGTATTTTGGAGAGCTGTTGCCGAAGAATTACTTTGGTTTGTA 1697 Query 35287 CAGGGGCAATACAGACGCCAAAGAATTGGCCAAGA--AGAAGATACACATCTGGAACGCT 35344 || || ||| || ||| | ||| || ||||| |||| || ||||| ||| ||| Sbjct 1696 CATGGCCAA-ACCGACTCTAAATTGCTG--CAAGATAAGAATATTCACATATGGGACGGA 1640 Query 35345 AATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTATACGATAGAGCAGAGGGAGATTTG 35404 ||| | |||||||| | || | | || || || | | || || ||||| Sbjct 1639 AATAGTAGCCGGGAATTCCTAGATAAATGTGGTTTTGTGGAACGTGAGGAAGGCGATTTA 1580 Query 35405 GGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGATACCTGTTCTTCC 35464 || || || || || || |||||||||||||| || | ||||| || || Sbjct 1579 GGTCCAGTTTATGGTTTTCAATGGCGTCATTTCGGATCAAAATATCGCACTTGCAAGGAT 1520 Query 35465 GATTATACTGGAAAGGGTATTGATCAATTGGC-CAATATACTAAAGACCCTGAGAGAAAA 35523 | || | || |||| || |||||| | | ||| || | | || | | | || Sbjct 1519 AACTACAAAGGTGAGGGCATAGATCAACTAACACAAGTTATTGAT-ACAATCCGTAATAA 1461 Query 35524 TCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACCTTATGGC 35583 |||| ||||| || | || || ||| | |||||||||||| | ||| | | | ||||| Sbjct 1460 TCCAAATGATCGACGCATCATAATGTCTGCATGGAATCCTGTTGATATACCACAAATGGC 1401 Query 35584 TCTTCCTCCATGCCACATGACTG-CTCAATTTTATGTGGCTAATGGAGAATTGTCGTGCC 35642 | || ||||| || || ||| | ||||||| || || || || || | || || | Sbjct 1400 ATTACCACCATGTCAT-TGTCTGGCGCAATTTTTCGTTGCCAACGGTGAGCTATCATGTC 1342 Query 35643 AGTTGTATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGCATCATACT 35702 | || || || || |||| ||| | || ||||| ||||| ||||||||||| || || Sbjct 1341 AATTATACCAACGTAGCGCCGATATGGGTTTGGGTGTGCCATTCAATATTGCTTCCTATG 1282 Query 35703 CTCTTCTGACTCATCTGATGGCCAGTATGGTGGGTCTAAAACCGGGAGAGTTTATCCTCA 35762 |||| || ||| | |||| || ||| || || || ||||| ||| | | | Sbjct 1281 CTCTGCTTACTTACATGATTGCACATATAACAGGACTTCGGCCTGGAGACTTTGTTCATA 1222 Query 35763 CTCTTGGTGACGCACACATTTATAATACCCACATTGAG 35800 || | || || | || | ||||| | ||||||||| Sbjct 1221 CTTTGGGCGATACGCATGTCTATAAAAGTCACATTGAG 1184 >seq114852 Length=3422 Score = 91.5 bits (100), Expect = 3e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 93571 TTCACCACTTGGAATGATCCTGAAAGTACATTACGATTATACATGTTGGACGTTAAAGGC 93630 || || ||||| ||| || || ||||| ||||||||| || || || || |||| Sbjct 1174 TTAACAACTTGAAATTCACCCGATAGTACGCGACGATTATAAATATTTGAAGTATAAGGT 1233 Query 93631 TCAAAGGATTCAGAGTTGCCCAGGATCTGTGCAGTGGATGCAGTAGGCATGGGAGCAACA 93690 ||||| |||||| |||||||| || || ||||| ||||||||||||||||| || | | Sbjct 1234 TCAAAAGATTCATTGTTGCCCATAATTTGAGCAGTTGATGCAGTAGGCATGGGTGCCAAA 1293 Query 93691 AACATTGAATTGTGAACACCATACT 93715 | | || ||| | || |||| || Sbjct 1294 AGTAAGGAGTTGCGTACGCCATGCT 1318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 987259994446725