Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq114852 493 2e-134 seq66438 221 2e-52 >seq114852 Length=3422 Score = 493 bits (546), Expect = 2e-134 Identities = 1241/1860 (67%), Gaps = 50/1860 (3%) Strand=Plus/Plus Query 62067 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 62126 || ||||| ||||||| ||| ||||| || ||||| || || |||| || |||| Sbjct 856 GCTGGTTTGGTACGTAAATAATACATGCCAGTTTTGAGCCCCGCTTTCCAACCAAAAAAG 915 Query 62127 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 62186 || ||| || |||||| ||| | || || |||| ||| ||||| | ||||| ||| Sbjct 916 TGTATAGATGTAAGTTTGCCATAGTTTGGTTCAGCTACATGAATATTAAACGATTGGCTT 975 Query 62187 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCC 62246 ||||| || || || || | || || ||||| || || | |||||| | || ||| Sbjct 976 TGATCAATAAATGCGCCACGATCGGCTGCCATCTTCATTGTAGTCTTTACCGATATCTCC 1035 Query 62247 CAAATAGTTTTATAAACT-CGCTTAATATCTTCTGGAAGGTTTGTATTC--TGAATGGAT 62303 || | ||| || |||| | | | || | | | | | | |||| || | || || || Sbjct 1036 CACACAGTCTTGTAAAGTTCACGTATTTTTTGCGGTATTGTTTCAATACCTTGTATTGAA 1095 Query 62304 CCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAA 62363 |||| | ||||| || | || || ||||||| ||| || ||||| | | Sbjct 1096 CCACGACTGGTTATAATTTTAGTTTTCATTTCATCATCCCACAAACCCAATTCGGTAAGA 1155 Query 62364 ACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAA 62423 | | | | ||| | ||||| ||||| ||||| || || | ||| | ||| | ||| Sbjct 1156 TCGCGTAACAAATGATGATTAACAACTTGAAATTCACCCGATAGTACGCGACGATTATAA 1215 Query 62424 ATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCA 62483 ||||| ||||| ||||| | || ||||| || |||| ||||||||||||||||||| Sbjct 1216 ATATTTGAAGTATAAGGTTCAAAAGATTCATTGTTGCCCATAATTTGAGCAGTTGATGCA 1275 Query 62484 GTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTA-TGTTCTGATTTTATCTTT 62542 || ||||| ||||||| | ||| || | | || | || | | ||||| ||||| Sbjct 1276 GTAGGCATGGGTGCCAAAAGTAAGGAGTTGCGTACGCCATGCTGCTTT-ATTTTCTCTTT 1334 Query 62543 TAGAT---GTTCCCAATTCCAAAGATCCGACGGTACAACANNNNNNNNNNNATATTGTAG 62599 | || || ||| | ||| ||||| | ||| | |||||| || Sbjct 1335 CA-ATACAGT--CCAGTCCCATAGATCGGTTGGTTTTTTATTCCACATATCATATTGGAG 1391 Query 62600 AATACCGTTACTGGCGTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAG 62659 ||||| || || | || ||| | ||||| ||||| | || | || ||||| | Sbjct 1392 TATACCTTTGCTAACAGGTGAGCCTTCGTATGTTTCATAAGTACCATATTTTTCAGCCAA 1451 Query 62660 TTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTA-GAT 62718 || |||||| || || ||||| || || || || ||||| || || | | ||| | || Sbjct 1452 TTCACAACTAGCTTCCAATGCGCCATAGTACATTGTTTCGAAAATTTGTTGATTCAAGA- 1510 Query 62719 CTTGTGCTTCCGG---GCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATC 62775 |||| || | ||| || |||| ||| | || || || || || || || | Sbjct 1511 ---GTGCAGCCTGCTCGCTCTCGTATGGGTAACGCATAAGGATTAAAGCATCTGCAAAAC 1567 Query 62776 CTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAG 62835 |||| || ||||||||||| || | |||||| || || | | | ||| || | | Sbjct 1568 CTTGTACGCCAATACCGATGGGGCGATGTCTGAAGTTTGATTTCTTTGTTTCGGGCAATG 1627 Query 62836 GATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACT---TTGACCACAT 62892 |||||| ||| | || ||||||||||| ||||| | |||| ||| || | Sbjct 1628 GATAATGATTCACTTCGATAATTTTATTTAGATTACGCG---TTACGGTCTTGGTAACTT 1684 Query 62893 CCTTCA---GTTTGAGAAAATCAAATCGCCCATC---TATTACAAACATGTTCAATGCAA 62946 | || | |||||| |||| || | || | | |||||||| || | |||| Sbjct 1685 CTTTTAAGCGTTTGA---AATCGTATGACTTTTCGGGTGTAACAAACATATTTAGCGCAA 1741 Query 62947 CAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGC 63006 ||||| | |||||| || ||||| |||| | | | ||| | | || || |||| Sbjct 1742 TCGATGCTAAATTACAAACAGCTACTTCATCCGGTGCTGAATACTCAACAATTTCTGTGC 1801 Query 63007 AAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCAT 63066 | | ||||||||| || || || || | |||||||||||||||||| ||||| |||| Sbjct 1802 ATAAATTACTACATTTAATGGTGCCAACATTTTGTTGATTACTCTTCCGATTACATGCAT 1861 Query 63067 CCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA 63126 |||| || || ||| |||| || || || || | || ||||| ||||| || ||| | Sbjct 1862 CCTTGTACAGCATGTATGGTGTGCCGGTCTCTACTTGCGATTCAATAATAGCAAACCAAA 1921 Query 63127 CGACTC-GAGCCTTTATTATAGATTTGTATCTCCTTTCTCTT--TCGTATAGAGTATACA 63183 |||| | || || | | | || || | | | ||||| || ||| |||||| | Sbjct 1922 -GACTTTGTGCTTTCACTGTC--TTATTAGCGCGTCCCTCTTGCTCATATTTAGTATATA 1978 Query 63184 ATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCA 63243 || |||||||||| || ||||| || | | || | |||||| | | || ||||||| Sbjct 1979 ATTGTTCGAACTCATCACCCCATACCTCATGCAGACCAGGACACTTGTGAGGGCACATCA 2038 Query 63244 ACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTA 63303 |||||| ||| | | | | | || ||||||||||| ||||| || ||||| | ||| Sbjct 2039 GCGACCAATCTTCATTAGCTTCAACACGTTTCATAAAAAGATCTGGTATCCATAAAGCAT 2098 Query 63304 TAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACG 63363 ||||| |||||| | | |||||| || || || || || || || | ||| | ||| Sbjct 2099 AAAATAAATCTCTAGCACGATGTTCTTCCTTGCCAGTGTTTTTCTTTAAATCCAAAAACT 2158 Query 63364 CCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTC 63423 | | | ||| | |||||| ||||| || || || || | | ||||| ||||| | Sbjct 2159 CAAATACATCTGCATGCCATGGTTCTAAATAGATTGCAAACGCGCCAGGACGTTTACCAC 2218 Query 63424 CTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGT 63483 | |||||||||| || | || ||||| | |||||||||||||| | | ||| | Sbjct 2219 CGCCCTGATCTACATAACGTGCCACATTATTGAATACTCTCAACATTGGTACCAAACCAT 2278 Query 63484 TTGATATACCATTGGTACCGGAGATATAGCCT-CCACTGGCACGAATATTA-CTA-ATTG 63540 | ||| | ||||| ||||||| || | | | || || || || ||| | || |||| Sbjct 2279 TCGATGTGCCATTTGTACCGGCAAT-TGCCGTGCCTCTAGCGCGTATACAATGTACATTG 2337 Query 63541 ATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG-TGTCATAG 63599 || || || || || || ||| || |||||||| ||| | | | | || | | Sbjct 2338 --AGTCCAATACCACCAGCTGATTTGGAAATTAATGCACATTGATGTGCTGAAGTGA-AT 2394 Query 63600 ATGCCTTCTATGCTATCATCGATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACG 63658 ||||| || || ||| ||| || ||| ||| ||||| || || | ||| | | Sbjct 2395 ATGCCATCAATCGAATCGGCGACCATTGTCAAG-AGAAAGCAAGATGATAGTTGTGGCTG 2453 Query 63659 AGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAG 63718 | ||| | ||| || | || || ||||| |||||||| | ||| ||||||| Sbjct 2454 CCTTGTTGCGGCAGCGAACAGTGTTGGTGAAGCATGCGTAAAATAACGTTCTGAAAGTAA 2513 Query 63719 ATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCAT 63778 |||||| || || || |||| ||||||||| ||| || || | || |||||||| Sbjct 2514 ATTGTATGTTTCGATGGCTGCATCTATATCCTCGCCATGTATACCAATGGCAACACGCAT 2573 Query 63779 TAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTC 63838 |||||| ||||| || | |||||||||||| |||| | | | ||||| || ||| Sbjct 2574 TAACATATGCTGTGGACGCTCAACAATTTTGCCATTTAATCTGAGTAAGTAAGAACGTTC 2633 Query 63839 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATT 63898 || ||||||||||||||||| || || |||||| || || || |||||| | ||||| Sbjct 2634 CAGCGTTTTAAAACCAAAATAATTATAACCAAAGTCACGATCATATATAATAGCTGAATT 2693 >seq66438 Length=2923 Score = 221 bits (244), Expect = 2e-52 Identities = 477/709 (67%), Gaps = 20/709 (3%) Strand=Plus/Plus Query 33410 CAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAG 33469 ||| | ||| || || ||||| ||||| ||| | | ||||||||| || || | Sbjct 903 CAAGCGATCCGCCACAAATTCAATATAATCCGACATTAGCTTACAATTCATGCCAATCAA 962 Query 33470 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAAT 33529 || ||||| | ||| | || | |||||||||||||| ||||| | | || || Sbjct 963 ATTCACTGGCAAAGCATCTGTTAAGAATTCTTGTTCAATTTTAACCGCCTCAGCAATGAT 1022 Query 33530 A--AATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACATGCG 33587 ||| ||| | || |||||| |||| ||||||| ||||||| ||| || Sbjct 1023 TTCAATAATACGCTCCCT--ACTCGGCTTCTGTACCAAATGTTGGAACATCAGACAAGCA 1080 Query 33588 AAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGC 33647 ||||| || || | ||| || || | |||| || || || || || | |||||| Sbjct 1081 AAATCACAATGTAAACCTTCATCACGCGAGATTAGCTCATTGGAGAATGTCAAGCCGGGC 1140 Query 33648 ATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCT 33707 ||||| ||||| ||||| | |||||| || ||||| || ||| |||||| || ||| Sbjct 1141 ATTAGACCACGTTTTTTCAACCAAAAGATCGAAGCAAAACTACCGCTAAAGAATATGCCT 1200 Query 33708 TCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAA-CCGGCGC-TGTCATG-TATCCAC 33764 || || |||||||| ||||| | | || ||| || | ||| | | ||| ||||| Sbjct 1201 TCAACGGCAGCAAATGCAATGACACGTTCACCAAAATTAGCCGCTTTTGATGAGATCCAT 1260 Query 33765 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 33824 | | |||||||| ||||| || || ||| |||||||| || ||||||| | Sbjct 1261 GCTAGTGCCCAATCAGCCTTACGCTTAACGGCAGGGATCGTTTCAATAGCATTAA----A 1316 Query 33825 TAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAA 33884 || ||| | ||| |||| || ||||| || | || ||||||||||| ||| Sbjct 1317 TANTTT---------CCATCCTTAATGTAGGTATCAATAAGAATGCTATACATTTCTGAA 1367 Query 33885 TGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACT 33944 || | ||||| || || || ||||| || || || || | || |||||||| || ||| Sbjct 1368 TGCACATTTTCCATTGCTATTTGAAAGCCATAAAAGCAACGTGCTTCGGTAATTTGTACT 1427 Query 33945 TCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAAC 34004 ||| || || ||||| ||| ||||||||| || || ||||| ||| || || || Sbjct 1428 TCTTGACTGAAACGTTCAACTAGATTTTCATTAACAATACCATCGGAGGCGGCGAAGAAA 1487 Query 34005 GCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATA 34064 || || || ||| || |||| ||| | || || |||||| | || Sbjct 1488 GCTAAAACGTGTGATACGAAATGACGTTCATTGTCGGTAAGACGTACCCAATCGTCCATG 1547 Query 34065 TCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113 ||||| || | ||| || ||||| || |||||||| ||||| || |||| Sbjct 1548 TCTTTGGAGAGATCAACCTCTTCTACGGTCCAAAAGGATGCTTCGGCCT 1596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628374569787600