Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq114852 464 6e-126 seq66438 241 1e-58 >seq114852 Length=3422 Score = 464 bits (514), Expect = 6e-126 Identities = 1214/1842 (66%), Gaps = 26/1842 (1%) Strand=Plus/Plus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 |||||||| |||| ||||| ||||| || | ||| || | | ||||||||| |||||| Sbjct 829 TCAACTGTAAATTGTATAGCATTTGCAGCTGGTTTGGTACGTAAATAATACATGCCAGTT 888 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 || |||||| | |||| || |||| || ||| || ||||| | || | || | | Sbjct 889 TTGAGCCCCGCTTTCCAACCAAAAAAGTGTATAGATGTAAGTTTGCCATAGTTTGGTTCA 948 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969 ||| || || | | ||||| |||||||| ||||| || || | ||||||||||| Sbjct 949 GCTACATGAATATTAAACGATTGGCTTTGATCAATAAATGCGCCACGATCGGCTGCCATC 1008 Query 36970 TCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCT 37029 | | || ||| ||||||||||| || || || || | || ||| || | Sbjct 1009 TTCATTGTAGTCTTTACCGATATCTCCCACACAGTCTTGTAAAGTTCACGTATTTTTTGC 1068 Query 37030 GGTAAA---TCTAAATGTTGAATAGAACCATTATGTAACACAATTGTATTCTTTATGTCA 37086 |||| || | | ||| || |||||| | | |||| || | || || ||| Sbjct 1069 GGTATTGTTTCAATACCTTGTATTGAACCACGACTGGTTATAATTTTAGTTTTCATTTCA 1128 Query 37087 TTATTCCACATATTTCTACTTA--TTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAA 37144 | || ||||| | | | || | || || | || | || |||| ||||| |||| Sbjct 1129 TCATCCCACAAAC--CCAATTCGGTAAGATCGCGTAACAAATGATGATTAACAACTTGAA 1186 Query 37145 AATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCAT 37204 | || || |||| ||| | | |||| ||||| |||||| ||||||| || |||| Sbjct 1187 ATTCACCCGATAGTACGCGACGATTATAAATATTTGAAGTATAAGGTTCAAAAGATTCAT 1246 Query 37205 TATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTC 37264 | || | | ||||||| || |||||||||||||| ||||| | || | | || | Sbjct 1247 TGTTGCCCATAATTTGAGCAGTTGATGCAGTAGGCATGGGTGCCAAAAGTAAGGAGTTGC 1306 Query 37265 TCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGGGT 37324 | ||||| || ||| ||| ||| | | || |||| ||||||| ||| ||||| | Sbjct 1307 GTACGCCATGCTGCTTTATTTTCTCTTTCAATACAGTCCAGTCCCATAGATCGGTTGGTT 1366 Query 37325 TCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCT 37384 | || ||||||||||||||| || |||||||| || | || || | | ||||| | Sbjct 1367 TTTTATTCCACATATCATATTGGAGTATACCTTTGCTAACAGGTGAGCCTTCGTATGTTT 1426 Query 37385 CATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTG 37444 |||||| || || ||| ||| | ||| ||||||| ||| | |||| |||| || |||| Sbjct 1427 CATAAGTACCATATTTTTCAGCCAATTCACAACTAGCTTCCAATGCGCCATAGTACATTG 1486 Query 37445 TTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATA 37504 |||||||||||||| ||| || | | || | ||||| ||| ||| || | || | Sbjct 1487 TTTCGAAAATTTGTTGATTCAAGAGTGCAGCCTGCTCGCTCTCGTATGGGTAACGCATAA 1546 Query 37505 ATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAG 37564 || || |||| || ||||| || || || ||||| ||||| | |||| | || | Sbjct 1547 GGATTAAAGCATCTGCAAAACCTTGTACGCCAATACCGATGGGGCGATGTCTGAAGTTTG 1606 Query 37565 ATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTTTAA 37624 || | | ||| || |||||||| ||| | || || |||||||||||||| Sbjct 1607 ATTTCTTTGTTTCGGGCAATGGATAATGATTCACTTCGATAATTTTATTTAGATTACGCG 1666 Query 37625 CTAGTATTTTCGTAA-TTATTCTCAACTTGTCGAACATAAATACGTT--ATTATTAACAA 37681 || | || |||| || || | | | | | || | || || |||||| Sbjct 1667 TTACGGTCTTGGTAACTTCTTTTAAGCGTTTGAAATCGTATGACTTTTCGGGTGTAACAA 1726 Query 37682 ATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAAAT- 37740 | || | | || ||| ||| ||| |||||| ||||| |||||||| || | || ||| Sbjct 1727 ACATATTTAGCGCAATCGATGCTAAATTACAAACAGCTACTTCATC--CGGTGCTGAATA 1784 Query 37741 -TGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGA 37799 | | ||| ||||| || | |||||| || |||| || || | ||| |||||| Sbjct 1785 CTCAACAATTTCTGTGCATAAATTACTACATTTAATGGTGCCAACATTTTGTTGATTACT 1844 Query 37800 TTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTC 37859 || |||||| | ||| || || || || || || || || |||| ||| | || Sbjct 1845 CTTCCGATTACATGCATCCTTGTACAGCATGTATGGTGTGCCGGTCTCTACTTGCGATTC 1904 Query 37860 GATAATAGATTTCCATAAACTTCTTGCTTTAACGATCGCTTTAAtttttttCTTTGTTTC 37919 ||||||| ||| | |||| |||||| || || ||| | || | || Sbjct 1905 AATAATAGCAAACCAAAGACTTTGTGCTTTCACTGTCTTATTAGCGCGTCCCTCTTGCTC 1964 Query 37920 GTATTCTATATATAATTTGTTAAAATCATTCCCCCATACATC--GCATAATCCTGGACAT 37977 |||| ||||||||| | || |||| |||||||| || ||| | || ||||| Sbjct 1965 ATATTTAGTATATAATTGTTCGAACTCATCACCCCATACCTCATGCAGA--CCAGGACAC 2022 Query 37978 TCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCA 38037 | | || ||||| || ||||| ||||||| ||| || |||| |||||| | ||| Sbjct 2023 TTGTGAGGGCACATCAGCGACCAATCTTCATTAGCTTCAACACGTTTCATAAAAAGATCT 2082 Query 38038 GGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTT 38097 |||| |||||| ||| |||||||||| | | | || |||||| || || || || Sbjct 2083 GGTATCCATAAAGCATAAAATAAATCTCTAGCACGATGTTCTTCCTTGCCAGTGTTTTTC 2142 Query 38098 CTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCT 38157 |||| | ||| || |||| ||| || ||||||||||||| ||| || | | || Sbjct 2143 TTTAAATCCAAAAACTCAAATACATCTGCATGCCATGGTTCTAAATAGATTGCAAACGCG 2202 Query 38158 CCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAAC 38217 || || | |||| |||| ||||||| | ||| | | ||||| ||| ||| ||| Sbjct 2203 CCAGGACGTTTACCACCGCCCTGATCTACATAACGTGCCACATTATTGAATACTCTCAAC 2262 Query 38218 ATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGT 38277 || ||||| | |||||| ||| |||| ||| |||||| || || || |||| ||| Sbjct 2263 ATTGGTACCAAACCATTCGATGTGCCATTTGTACCGGCAATTGCCGTGCCTCTAGCGCGT 2322 Query 38278 ATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTT 38337 ||| | || | ||| || ||||| || ||| || ||||| || ||||| | | Sbjct 2323 ATACAATGTACATTGAGTCCAATACCACCAGCTGATTTGGAAATTAATGCACATTGATGT 2382 Query 38338 AACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGAC 38397 | | ||||| || || || || | |||| | | ||| ||| || Sbjct 2383 GCTGAAGTGAATATGCCATCAATCGAATCGGCGACCATTGTCAAGAGAAAGCAAGATGAT 2442 Query 38398 ATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTT 38457 | ||| ||| ||| |||| || | ||| || || ||||| | || | | Sbjct 2443 AGTTGTGGCTGCCTTGTTGCGGCAGCGAACAGTGTTGGTGAAGCATGCGTAAAATAACGT 2502 Query 38458 TCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGA 38517 || || | |||| |||||||| || | |||||||||| |||| || ||||| | Sbjct 2503 TCTGAAAGTAAATTGTATGTTTCGATGGCTGCATCTATATCCTCGCCATGTATACCAATG 2562 Query 38518 GATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTT----ATTATTCTGTTTAAG 38573 | || | ||||| |||||| ||||| | || | ||||| ||| |||| |||| Sbjct 2563 GCAACACGCATTAACATATGCTGTGGACGCTCAACAATTTTGCCATTTAATCTGAGTAAG 2622 Query 38574 TAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATA 38615 || ||| ||| | ||||| | ||||||||| |||| Sbjct 2623 TAAGAACG----TTCCAGCGTTTTAAAACCAAAATAATTATA 2660 >seq66438 Length=2923 Score = 241 bits (266), Expect = 1e-58 Identities = 475/696 (68%), Gaps = 34/696 (5%) Strand=Plus/Plus Query 11464 ATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGATCCAC 11523 ||| || || ||||| ||||| | ||||||| ||||||||| || || | || ||| Sbjct 909 ATCCGCCACAAATTCAATATAATCCGACATTAGCTTACAATTCATGCCAATCAAATTCAC 968 Query 11524 CGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCA---ATGATTATCGA 11580 || | |||| |||| || || || | ||| || |||||||| ||| |||||| || | Sbjct 969 TGGCAAAGCATCTGTTAAGAATTCTTGTTCAATTTTAACCGCCTCAGCAATGATT-TCAA 1027 Query 11581 CGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACATTAAACACGCAAAATC 11640 | ||| ||| || || |||| ||||||| ||||| | ||| |||||||| Sbjct 1028 --TAATACGCTCCCTACTCGGCTTCTGTACCAAATGTTGGAACATCAGACAAGCAAAATC 1085 Query 11641 ACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAA 11700 ||||||||||||||| || | ||||| ||||| || ||||| || |||||||| | Sbjct 1086 ACAATGTAAACCTTCATCACGCGAGATTAGCTCATTGGAGAATGTCAAGCCGGGCATTAG 1145 Query 11701 TCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCAC 11760 || |||||||| | |||||| || | |||||| ||| ||||||||| || || || Sbjct 1146 ACCACGTTTTTTCAACCAAAAGATCGAAGCAAAACTACCGCTAAAGAATATGCCTTCAAC 1205 Query 11761 AGCTGCAAATGCTACTACTCTTTCTCCA----TATACCTTGTTGCTAGATATCCATTTTC 11816 || |||||||| | || | ||| ||| || | | ||| | || |||||| | Sbjct 1206 GGCAGCAAATGCAATGACACGTTCACCAAAATTAGCCGCTTTTGAT-GAGATCCATGCTA 1264 Query 11817 TGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAATGCA 11876 ||||||||||| || || ||| || ||||| ||||| ||||||| Sbjct 1265 GTGCCCAATCAGCCTTACGCTTAACGGCAGGGATCGTTTCAATAGCATTAAATA------ 1318 Query 11877 TTTTTTCTATATTATCTCTTACATATGTATCTATTAATAA----ACTATACATTTCTGAA 11932 |||| || |||| ||||| ||| ||||| ||||||||||||||| Sbjct 1319 --NTTTCCAT------CCTTA---ATGTAGGTATCAATAAGAATGCTATACATTTCTGAA 1367 Query 11933 TGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACA 11992 || | ||||||||| ||||||||||| ||||| || || ||||| || | | ||||| Sbjct 1368 TGCACATTTTCCATTGCTATTTGAAAGCCATAAAAGCAACGTGCTTCGGTAATTTGTACT 1427 Query 11993 TCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAAT 12052 || | || | ||| ||| ||| ||||| ||||||||||| | || || || Sbjct 1428 TCTTGACTGAAACGTTCAACTAGATTTTCATTAACAATACCATCGGAGGCGGCGAAGAAA 1487 Query 12053 GCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTA-ATTTATCCCAATCATCTAA 12111 |||| | ||| || || | ||| | | || | | || ||||||| || | Sbjct 1488 GCTAAAACGTGTGATACGAAATGACGTTCATTGTCGGTAAGACGTA-CCCAATCGTCCAT 1546 Query 12112 ATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAA 12147 ||||| || | ||| || ||||| ||||||||||| Sbjct 1547 GTCTTTGGAGAGATCAACCTCTTCTACGGTCCAAAA 1582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 467451321834800