Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq114852 511 6e-140 seq66438 224 1e-53 >seq114852 Length=3422 Score = 511 bits (566), Expect = 6e-140 Identities = 1239/1858 (67%), Gaps = 46/1858 (2%) Strand=Plus/Plus Query 64860 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 64919 || ||||| ||||||| ||| ||||| || ||||| || || |||| || |||| Sbjct 856 GCTGGTTTGGTACGTAAATAATACATGCCAGTTTTGAGCCCCGCTTTCCAACCAAAAAAG 915 Query 64920 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 64979 || ||| || |||||| ||| | || || |||| ||| ||||| | ||||| ||| Sbjct 916 TGTATAGATGTAAGTTTGCCATAGTTTGGTTCAGCTACATGAATATTAAACGATTGGCTT 975 Query 64980 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 65039 ||||| || || || || | || || ||||| || || | |||||| | || ||| Sbjct 976 TGATCAATAAATGCGCCACGATCGGCTGCCATCTTCATTGTAGTCTTTACCGATATCTCC 1035 Query 65040 CAAATAGTTTTATAAACT-CGCTTAATATCTTCTGGAAGGTTTGTATTC--TGAATGGAT 65096 || | ||| || |||| | | | || | | | | | | |||| || | || || || Sbjct 1036 CACACAGTCTTGTAAAGTTCACGTATTTTTTGCGGTATTGTTTCAATACCTTGTATTGAA 1095 Query 65097 CCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAA 65156 |||| | | ||||| || | || || ||||||| ||| || ||||| | | Sbjct 1096 CCACGACTGGTTATAATTTTAGTTTTCATTTCATCATCCCACAAACCCAATTCGGTAAGA 1155 Query 65157 ACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAA 65216 | | | | ||| ||||||| ||||||||||| || || | ||| | ||| | ||| Sbjct 1156 TCGCGTAACAAATGATGATTAACAACTTGAAATTCACCCGATAGTACGCGACGATTATAA 1215 Query 65217 ATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCA 65276 ||||| ||||| ||||| | ||| ||||| || |||| ||||||||||||||||||| Sbjct 1216 ATATTTGAAGTATAAGGTTCAAAAGATTCATTGTTGCCCATAATTTGAGCAGTTGATGCA 1275 Query 65277 GTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTA-TGTTCTGATTTTATCTTT 65335 || ||||| ||||||| | ||| || | | || | || | | ||||| ||||| Sbjct 1276 GTAGGCATGGGTGCCAAAAGTAAGGAGTTGCGTACGCCATGCTGCTTT-ATTTTCTCTTT 1334 Query 65336 ---TAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAG 65392 || || ||| | ||| ||||| | ||| ||| || Sbjct 1335 CAATACAGT---CCAGTCCCATAGATCGGTTGGTTTTTTATTCCACATATCATATTGGAG 1391 Query 65393 AATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAG 65452 ||||| || || | || ||| | ||||| || || | || | || ||||| | Sbjct 1392 TATACCTTTGCTAACAGGTGAGCCTTCGTATGTTTCATAAGTACCATATTTTTCAGCCAA 1451 Query 65453 TTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTA-GAT 65511 ||||||||| || || ||||| || || || || |||||||| || | | ||| | || Sbjct 1452 TTCACAACTAGCTTCCAATGCGCCATAGTACATTGTTTCGAAAATTTGTTGATTCAAGA- 1510 Query 65512 CTTGTGCTTCCAG---GCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATC 65568 |||| || | ||| || |||| ||| | || || || || ||||| || | Sbjct 1511 ---GTGCAGCCTGCTCGCTCTCGTATGGGTAACGCATAAGGATTAAAGCATCTGCAAAAC 1567 Query 65569 CTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAG 65628 |||| || ||||||||||| || | |||||| || || | | | ||| || | | Sbjct 1568 CTTGTACGCCAATACCGATGGGGCGATGTCTGAAGTTTGATTTCTTTGTTTCGGGCAATG 1627 Query 65629 GATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACT---TTGACCACAT 65685 |||||| ||| | || ||||||||||| ||||| | |||| ||| || | Sbjct 1628 GATAATGATTCACTTCGATAATTTTATTTAGATTACGCG---TTACGGTCTTGGTAACTT 1684 Query 65686 CCTTCA---GTTTGAGAAAATCAAATCGCTCATC---TATTACAAACATGTTCAATGCAA 65739 | || | |||||| |||| || || || | | |||||||| || | |||| Sbjct 1685 CTTTTAAGCGTTTGA---AATCGTATGACTTTTCGGGTGTAACAAACATATTTAGCGCAA 1741 Query 65740 CAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGC 65799 ||||| | ||||||||| ||||| |||| | | | ||| | | || || |||| Sbjct 1742 TCGATGCTAAATTACAAACAGCTACTTCATCCGGTGCTGAATACTCAACAATTTCTGTGC 1801 Query 65800 AAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCAT 65859 | | ||||||||| || ||||| || | |||||||||||||||||| ||||| |||| Sbjct 1802 ATAAATTACTACATTTAATGGTGCCAACATTTTGTTGATTACTCTTCCGATTACATGCAT 1861 Query 65860 CCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA 65919 |||| || || ||| |||| || || || || | || ||||| ||||| || ||| | Sbjct 1862 CCTTGTACAGCATGTATGGTGTGCCGGTCTCTACTTGCGATTCAATAATAGCAAACCAAA 1921 Query 65920 CGACTC-GAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGT--GTATACA 65976 |||| | || || | | | || || | | | ||||| | ||| | ||||| | Sbjct 1922 -GACTTTGTGCTTTCACTGTC--TTATTAGCGCGTCCCTCTTGCTCATATTTAGTATATA 1978 Query 65977 ATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCA 66036 || |||||||||| || ||||| || | | || |||||||| | | || ||||||| Sbjct 1979 ATTGTTCGAACTCATCACCCCATACCTCATGCAGACCAGGACACTTGTGAGGGCACATCA 2038 Query 66037 ACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTA 66096 |||||| ||| | | | | | || ||||||||||| ||||| || ||||| | ||| Sbjct 2039 GCGACCAATCTTCATTAGCTTCAACACGTTTCATAAAAAGATCTGGTATCCATAAAGCAT 2098 Query 66097 TAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACG 66156 |||||||||||| | | |||||| || || || || || || || | ||| | ||| Sbjct 2099 AAAATAAATCTCTAGCACGATGTTCTTCCTTGCCAGTGTTTTTCTTTAAATCCAAAAACT 2158 Query 66157 CCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTC 66216 | | | ||| |||||| ||||| || || || || | | ||||| ||||| | Sbjct 2159 CAAATACATCTGCATGCCATGGTTCTAAATAGATTGCAAACGCGCCAGGACGTTTACCAC 2218 Query 66217 CTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCAT 66276 | |||||||||| || | || ||||| | |||||||||||||| | | ||||| Sbjct 2219 CGCCCTGATCTACATAACGTGCCACATTATTGAATACTCTCAACATTGGTACCAAACCAT 2278 Query 66277 TGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTA-CTA-ATTGA 66334 | ||||| ||||| || |||| || | || || || || ||| | || |||| Sbjct 2279 TCGATGTGCCATTTGTACCGGCAATTGCCGTGCCTCTAGCGCGTATACAATGTACATTG- 2337 Query 66335 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 66394 || || || || || || ||| || |||||||| ||| | | | | | | || Sbjct 2338 -AGTCCAATACCACCAGCTGATTTGGAAATTAATGCACATTGATGTGCTGAAGTGAATAT 2396 Query 66395 GCCCTCTATACTATCATCCATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAC 66453 ||| || || ||| | | || ||| ||| ||||| || || | ||| | | | Sbjct 2397 GCCATCAATCGAATCGGCGACCATTGTCAAG-AGAAAGCAAGATGATAGTTGTGGCTGCC 2455 Query 66454 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGAT 66513 | ||| | ||| || | || || ||||| |||||||| | ||| ||||||| || Sbjct 2456 TTGTTGCGGCAGCGAACAGTGTTGGTGAAGCATGCGTAAAATAACGTTCTGAAAGTAAAT 2515 Query 66514 TGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTA 66573 |||| || || || |||| ||||||||| ||| || || | || |||||||||| Sbjct 2516 TGTATGTTTCGATGGCTGCATCTATATCCTCGCCATGTATACCAATGGCAACACGCATTA 2575 Query 66574 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 66633 |||| ||||| || | ||||| || ||| |||| | | | ||||| || ||||| Sbjct 2576 ACATATGCTGTGGACGCTCAACAATTTTGCCATTTAATCTGAGTAAGTAAGAACGTTCCA 2635 Query 66634 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTT 66691 ||||||||||||||||| || || |||||| || || || |||||| | || || Sbjct 2636 GCGTTTTAAAACCAAAATAATTATAACCAAAGTCACGATCATATATAATAGCTGAATT 2693 >seq66438 Length=2923 Score = 224 bits (248), Expect = 1e-53 Identities = 477/709 (67%), Gaps = 20/709 (3%) Strand=Plus/Plus Query 35986 CAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 36045 ||| | ||| || |||||||| ||||| ||| | | ||||||||| || || | Sbjct 903 CAAGCGATCCGCCACAAATTCAATATAATCCGACATTAGCTTACAATTCATGCCAATCAA 962 Query 36046 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 36105 || ||||| | ||| | || | |||||||||||||| ||||| || | || || Sbjct 963 ATTCACTGGCAAAGCATCTGTTAAGAATTCTTGTTCAATTTTAACCGCCTCAGCAATGAT 1022 Query 36106 AG--ATATTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCG 36163 ||| ||| | || |||||| | | ||||||| ||||||| ||| || Sbjct 1023 TTCAATAATACGCTCCCT--ACTCGGCTTCTGTACCAAATGTTGGAACATCAGACAAGCA 1080 Query 36164 AAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 36223 ||||| || |||| ||| || || | |||| || ||||| || || | |||||| Sbjct 1081 AAATCACAATGTAAACCTTCATCACGCGAGATTAGCTCATTGGAGAATGTCAAGCCGGGC 1140 Query 36224 ATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCT 36283 ||||| ||||| ||||| | |||||| || || ||||| || |||||| || ||| Sbjct 1141 ATTAGACCACGTTTTTTCAACCAAAAGATCGAAGCAAAACTACCGCTAAAGAATATGCCT 1200 Query 36284 TCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCAC--TGTCATGT-ATCCAC 36340 || || || ||||| ||||| | | || ||| || || | | ||| ||||| Sbjct 1201 TCAACGGCAGCAAATGCAATGACACGTTCACCAAAATTAGCCGCTTTTGATGAGATCCAT 1260 Query 36341 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGA 36400 | | |||||||| ||||| || || ||| || || || ||||||||||| Sbjct 1261 GCTAGTGCCCAATCAGCCTTACGCTTAACGGCAGGGATCGTTTCAATAGCATTAAA---- 1316 Query 36401 TAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAA 36460 || ||| | ||| |||| || |||||||| | || ||||||||||| ||| Sbjct 1317 TANTTT---------CCATCCTTAATGTAGGTATCAATAAGAATGCTATACATTTCTGAA 1367 Query 36461 TGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACT 36520 || | ||||| || || |||||||| || || || || | || |||||||| |||||| Sbjct 1368 TGCACATTTTCCATTGCTATTTGAAAGCCATAAAAGCAACGTGCTTCGGTAATTTGTACT 1427 Query 36521 TCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAAC 36580 ||| || || ||||| ||| ||||||||| || || || || ||| || || || Sbjct 1428 TCTTGACTGAAACGTTCAACTAGATTTTCATTAACAATACCATCGGAGGCGGCGAAGAAA 1487 Query 36581 GCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATA 36640 || || || ||| || |||| ||| || || || |||||| | || Sbjct 1488 GCTAAAACGTGTGATACGAAATGACGTTCATTGTCGGTAAGACGTACCCAATCGTCCATG 1547 Query 36641 TCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 36689 ||||| || | ||| || ||||| || |||||||| ||||| || |||| Sbjct 1548 TCTTTGGAGAGATCAACCTCTTCTACGGTCCAAAAGGATGCTTCGGCCT 1596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 656664802707800