Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq114852 134 1e-26 >seq114852 Length=3422 Score = 134 bits (148), Expect = 1e-26 Identities = 482/747 (65%), Gaps = 19/747 (3%) Strand=Plus/Plus Query 153072 TTGACAACTTGAAATTCGCCCGACAATACACGTC--TCAAAAACAAATTACTGTGAAACG 153129 || |||||||||||||| ||||| | ||| || | | | ||| | | | || || | Sbjct 1174 TTAACAACTTGAAATTCACCCGATAGTACGCGACGATTATAAATATTTGAA-GTATAA-G 1231 Query 153130 GTTCAAACGACTCGTTGTTATTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCCA 153189 ||||||| || || ||||| | ||||| || || | || || |||||| |||| Sbjct 1232 GTTCAAAAGATTCATTGTTGCCCATAATTTGAGCAGTTGATGCAGTAGGCATGGGTGCCA 1291 Query 153190 CAAGCAACGAATTACGTAATCCGTGTTTTTGTATGTTCATCTTCAATTGTGACCAGTCCC 153249 ||| || || || |||| || || | | ||| ||| |||||| | |||||||| Sbjct 1292 AAAGTAAGGAGTTGCGTACGCCATGCTGCTTTATTTTCTCTTTCAATACAGTCCAGTCCC 1351 Query 153250 ATAACGAAGTAGGTATCGCATTCCACAAATCGTATTGCAATATCCCTTGGCTAGCTTTGC 153309 ||| || ||| | |||||||| ||| ||||| | ||| |||| |||| | Sbjct 1352 ATAGATCGGTTGGTTTTTTATTCCACATATCATATTGGAGTATACCTTTGCTAACAGGTG 1411 Query 153310 TACCGGCAAACGTGCTATACGGCTCAC---TGTCAGACGCCAGTTTCAAACTGGCATCGA 153366 || | | || ||| | || | |||| ||| || |||| || || | Sbjct 1412 AGCCTTCGTATGTTTCATAAGTACCATATTTTTCAG---CCAATTCACAACTAGCTTCCA 1468 Query 153367 GCGCGGCATGATACACAGTTTCGGAAATCTGTTTGTTCAGTAAAACGGCAGCAT---CGC 153423 ||| ||| |||| |||||| |||| |||| |||| | | ||||| | ||| Sbjct 1469 ATGCGCCATAGTACATTGTTTCGAAAATTTGTTGATTCA---AGAGTGCAGCCTGCTCGC 1525 Query 153424 TCACGTACGGTATGCGCAACATGACAAATGCATCGGCCAAACCTTGAATGCCAATGCCTA 153483 || |||| || |||| | || || ||||| || |||||||| | |||||| || | Sbjct 1526 TCTCGTATGGGTAACGCATAAGGATTAAAGCATCTGCAAAACCTTGTACGCCAATACCGA 1585 Query 153484 TGGGACGATGGCGCATATTAGAtttttttGCAGCTTCAACAGGATAGAAATTGCGGTCGA 153543 |||| ||||| | | || ||||| |||| | | ||||| ||| |||| Sbjct 1586 TGGGGCGATGTCTGAAGTTTGATTTCTTTGTTTCGGGCAATGGATAATGATTCACTTCGA 1645 Query 153544 TAATTTTATTTAAACTAATCACGACATGTTTCACCACAGAATGCAACAGTTGAAAATCAA 153603 |||||||||||| | || | || || || | || ||| ||||| Sbjct 1646 TAATTTTATTTAGATTACGCGTTACGGTCTTGGTAACTTCTTTTAAGCGTTTGAAATCGT 1705 Query 153604 ACG---TTCCATTAATGATATATTTGTTGACGGCAATCGACGCCAAGTTGCAAACGGCAG 153660 | | || | | | | | | || | |||||||| || || || ||||| || Sbjct 1706 ATGACTTTTCGGGTGTAACAAACATATTTAGCGCAATCGATGCTAAATTACAAACAGCTA 1765 Query 153661 TTTCGTCGGGGGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAGGC 153720 ||| || || || |||| | || ||||| | || ||||| || ||||| || || Sbjct 1766 CTTCATCCGGTGCTGAATACTCAACAATTTCTGTGCATAAATTACTACATTTAATGGTGC 1825 Query 153721 CGCAATTACTTTGATTGCTTTTGCGGTTACAAGCGTCCTTGTATAGCATGTATGGTGTGC 153780 | ||| |||||| || || || ||||| || |||||||| |||||||||||||||| Sbjct 1826 CAACATTTTGTTGATTACTCTTCCGATTACATGCATCCTTGTACAGCATGTATGGTGTGC 1885 Query 153781 CGGTTTCGGCTTGAATTTCTATAATAG 153807 |||| || |||| ||| ||||||| Sbjct 1886 CGGTCTCTACTTGCGATTCAATAATAG 1912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494927424364000