Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq114852 587 1e-162 seq66438 239 6e-58 >seq114852 Length=3422 Score = 587 bits (650), Expect = 1e-162 Identities = 1257/1854 (68%), Gaps = 38/1854 (2%) Strand=Plus/Plus Query 78739 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAGAAA 78798 || ||||| ||||||| ||| ||||| || ||||| || || |||| || | || Sbjct 856 GCTGGTTTGGTACGTAAATAATACATGCCAGTTTTGAGCCCCGCTTTCCAACCAAAAAAG 915 Query 78799 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 78858 || ||| || |||||| ||| | || || |||| ||| ||||| | ||||| ||| Sbjct 916 TGTATAGATGTAAGTTTGCCATAGTTTGGTTCAGCTACATGAATATTAAACGATTGGCTT 975 Query 78859 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 78918 ||||| || || || || | || || ||||| || || | |||||| | || ||| Sbjct 976 TGATCAATAAATGCGCCACGATCGGCTGCCATCTTCATTGTAGTCTTTACCGATATCTCC 1035 Query 78919 CAAATAGTTTTATAAACT-CGCTTAATATCTTCTGGAAGGTTTGTATTC--TGAATGGAT 78975 || | ||| || |||| | | | || | | | | | | |||| || | || || || Sbjct 1036 CACACAGTCTTGTAAAGTTCACGTATTTTTTGCGGTATTGTTTCAATACCTTGTATTGAA 1095 Query 78976 CCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAA 79035 |||| | | ||||| || | || || || |||| ||| || ||||| | | Sbjct 1096 CCACGACTGGTTATAATTTTAGTTTTCATTTCATCATCCCACAAACCCAATTCGGTAAGA 1155 Query 79036 ACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAA 79095 | | | | ||| ||||||| ||||||||||| || || | ||| | ||| | ||| Sbjct 1156 TCGCGTAACAAATGATGATTAACAACTTGAAATTCACCCGATAGTACGCGACGATTATAA 1215 Query 79096 ATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCC 79155 ||||| ||||| ||||| | |||||||| || |||| |||||||||||||||||| Sbjct 1216 ATATTTGAAGTATAAGGTTCAAAAGATTCATTGTTGCCCATAATTTGAGCAGTTGATGCA 1275 Query 79156 GTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTA-TGATCTGATTTTATCTTT 79214 || ||||| ||||||| | ||| || | | || | || | | ||||| ||||| Sbjct 1276 GTAGGCATGGGTGCCAAAAGTAAGGAGTTGCGTACGCCATGCTGCTTT-ATTTTCTCTTT 1334 Query 79215 TAG-AGATTCCCAATCCCAAAGATCAGACGGGACAACATTCCAAAGATCATATTGTAGAA 79273 | | | ||| | ||||| ||||| | || |||||| | ||||||||| || | Sbjct 1335 CAATACAGTCC-AGTCCCATAGATCGGTTGGTTTTTTATTCCACATATCATATTGGAGTA 1393 Query 79274 TACCGTTACTAGCGTATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATT 79333 |||| || ||| | ||| ||| |||||||||||||| || | ||||| || |||| Sbjct 1394 TACCTTTGCTAACAGGTGAGCCTTCGTATGTTTCATAAGTACCATATTTTTCAGCCAATT 1453 Query 79334 CACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGA-GATCT 79392 ||||||| || || ||||| || || || || ||||||||||| | | ||| | || Sbjct 1454 CACAACTAGCTTCCAATGCGCCATAGTACATTGTTTCGAAAATTTGTTGATTCAAGA--- 1510 Query 79393 TGTGCTTCTAG---GCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCT 79449 |||| | | ||| || |||| ||| | || || || || ||||| || ||| Sbjct 1511 -GTGCAGCCTGCTCGCTCTCGTATGGGTAACGCATAAGGATTAAAGCATCTGCAAAACCT 1569 Query 79450 TGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGA 79509 || || ||||||||||| || | |||||| || || | | | ||| || | ||| Sbjct 1570 TGTACGCCAATACCGATGGGGCGATGTCTGAAGTTTGATTTCTTTGTTTCGGGCAATGGA 1629 Query 79510 TAATAATTAATATCTATAATTTTATTGAGATTCCTGACTATTACTTTGACCACATCCTTT 79569 |||| ||| | || ||||||||||| ||||| | || ||| || || ||| Sbjct 1630 TAATGATTCACTTCGATAATTTTATTTAGATTACGCGTTACGGTCTTGGTAACTTCTTTT 1689 Query 79570 A---GTTTGAGAAAATCAAATCGTCCATC---TATTACAAACATGTTCAACGCGACAGAT 79623 | |||||| |||| || || | | |||||||| || | ||| | ||| Sbjct 1690 AAGCGTTTGA---AATCGTATGACTTTTCGGGTGTAACAAACATATTTAGCGCAATCGAT 1746 Query 79624 GCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGG 79683 || | ||||||||| ||||| |||| | | | ||| | | ||||| ||||| | Sbjct 1747 GCTAAATTACAAACAGCTACTTCATCCGGTGCTGAATACTCAACAATTTCTGTGCATAAA 1806 Query 79684 TTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTA 79743 |||||||| |||||||| || | |||||||||||||||||| ||||| |||||||| Sbjct 1807 TTACTACATTTAATGGTGCCAACATTTTGTTGATTACTCTTCCGATTACATGCATCCTTG 1866 Query 79744 TAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACT 79803 || || ||| | || || || || || | || ||||| ||||| || ||| | |||| Sbjct 1867 TACAGCATGTATGGTGTGCCGGTCTCTACTTGCGATTCAATAATAGCAAACCAAA-GACT 1925 Query 79804 C-GAGCCTTTATTATAGACTTGT-ATCTCTTTTCTCTT--TCGTATTGTGTATATAATCG 79859 | || || | | | ||| | | | | | ||||| || |||| ||||||||| | Sbjct 1926 TTGTGCTTTCACTGT---CTTATTAGCGCGTCCCTCTTGCTCATATTTAGTATATAATTG 1982 Query 79860 TTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGA 79919 ||||||||| || ||||| || || | | |||||||| | || ||| ||||||| ||| Sbjct 1983 TTCGAACTCATCACCCCATACCTCATGCAGACCAGGACACTTGTGAGGGCACATCAGCGA 2042 Query 79920 CCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 79979 ||| ||| ||| | | | || ||||||||||| ||||| || ||||| | ||| ||| Sbjct 2043 CCAATCTTCATTAGCTTCAACACGTTTCATAAAAAGATCTGGTATCCATAAAGCATAAAA 2102 Query 79980 TAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 80039 || |||||| | | ||| || || || || || || || || | ||| | ||| | | Sbjct 2103 TAAATCTCTAGCACGATGTTCTTCCTTGCCAGTGTTTTTCTTTAAATCCAAAAACTCAAA 2162 Query 80040 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCC 80099 | ||| | |||||| ||||| || || || || | | || || ||||| || || Sbjct 2163 TACATCTGCATGCCATGGTTCTAAATAGATTGCAAACGCGCCAGGACGTTTACCACCGCC 2222 Query 80100 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 80159 |||||||| || | || ||||| | |||||||||||||| | | |||||| || Sbjct 2223 CTGATCTACATAACGTGCCACATTATTGAATACTCTCAACATTGGTACCAAACCATTCGA 2282 Query 80160 TGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTA-CTA-ATTGATAGA 80217 ||| ||||| || |||| || | || || || || ||| | || |||| || Sbjct 2283 TGTGCCATTTGTACCGGCAATTGCCGTGCCTCTAGCGCGTATACAATGTACATTG--AGT 2340 Query 80218 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 80277 || || || || || ||| || |||||||| ||| | | | | | | ||||| Sbjct 2341 CCAATACCACCAGCTGATTTGGAAATTAATGCACATTGATGTGCTGAAGTGAATATGCCA 2400 Query 80278 TCTATGCTATCATCAATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 80336 || || ||| | | || ||| ||| ||||| || || | ||| | | || || Sbjct 2401 TCAATCGAATCGGCGACCATTGTCAAG-AGAAAGCAAGATGATAGTTGTGGCTGCCTTGT 2459 Query 80337 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTA 80396 | | ||| || | || || ||||| |||||||| | ||| || |||| |||||| Sbjct 2460 TGCGGCAGCGAACAGTGTTGGTGAAGCATGCGTAAAATAACGTTCTGAAAGTAAATTGTA 2519 Query 80397 CGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACAT 80456 || || || |||| ||||||||| ||| || || | || |||||||||||||| Sbjct 2520 TGTTTCGATGGCTGCATCTATATCCTCGCCATGTATACCAATGGCAACACGCATTAACAT 2579 Query 80457 GTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGT 80516 ||||| || | ||||| || ||| ||||| | | | |||||||| ||||| || Sbjct 2580 ATGCTGTGGACGCTCAACAATTTTGCCATTTAATCTGAGTAAGTAAGAACGTTCCAGCGT 2639 Query 80517 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTT 80570 ||||||||||||||| || || |||||| || || || |||||| | || || Sbjct 2640 TTTAAAACCAAAATAATTATAACCAAAGTCACGATCATATATAATAGCTGAATT 2693 >seq66438 Length=2923 Score = 239 bits (264), Expect = 6e-58 Identities = 481/709 (68%), Gaps = 20/709 (3%) Strand=Plus/Plus Query 49788 CAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 49847 ||| | |||||| |||||||| ||||| ||| | | ||||||||| || || | Sbjct 903 CAAGCGATCCGCCACAAATTCAATATAATCCGACATTAGCTTACAATTCATGCCAATCAA 962 Query 49848 TTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAAT 49907 || ||||| | ||| | || | |||||||||||||| ||||| || | || || Sbjct 963 ATTCACTGGCAAAGCATCTGTTAAGAATTCTTGTTCAATTTTAACCGCCTCAGCAATGAT 1022 Query 49908 AGATCTAA--CGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCG 49965 ||| || | || |||||| || | ||||||| ||||||| ||| || Sbjct 1023 TTCAATAATACGCTCCCT--ACTCGGCTTCTGTACCAAATGTTGGAACATCAGACAAGCA 1080 Query 49966 AAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGC 50025 ||||| || || | ||| || || | ||||| || ||||| || || | |||||| Sbjct 1081 AAATCACAATGTAAACCTTCATCACGCGAGATTAGCTCATTGGAGAATGTCAAGCCGGGC 1140 Query 50026 ATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCT 50085 ||||| ||||| ||||| | |||||| || || ||||| || |||||| || ||| Sbjct 1141 ATTAGACCACGTTTTTTCAACCAAAAGATCGAAGCAAAACTACCGCTAAAGAATATGCCT 1200 Query 50086 TCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGC-GCTGTC-ATGT-ATCCAC 50142 || || || ||||| |||| | | || ||| || | || ||| | ||| ||||| Sbjct 1201 TCAACGGCAGCAAATGCAATGACACGTTCACCAAAATTAGCCGCTTTTGATGAGATCCAT 1260 Query 50143 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 50202 | | |||||||| ||||| || || ||| |||||||| || |||||||| Sbjct 1261 GCTAGTGCCCAATCAGCCTTACGCTTAACGGCAGGGATCGTTTCAATAGCATTAAA---- 1316 Query 50203 TAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAA 50262 || ||| | ||| |||| || ||||| || | || ||||||||||| ||| Sbjct 1317 TANTTT---------CCATCCTTAATGTAGGTATCAATAAGAATGCTATACATTTCTGAA 1367 Query 50263 TGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACT 50322 || | ||||| || || || ||||| || || || || | || |||||||| || ||| Sbjct 1368 TGCACATTTTCCATTGCTATTTGAAAGCCATAAAAGCAACGTGCTTCGGTAATTTGTACT 1427 Query 50323 TCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAAC 50382 ||| || || |||||| ||| ||||||||| || || || || ||| || || || Sbjct 1428 TCTTGACTGAAACGTTCAACTAGATTTTCATTAACAATACCATCGGAGGCGGCGAAGAAA 1487 Query 50383 GCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATA 50442 || || || ||| || ||||| ||| ||| || || |||||| | || Sbjct 1488 GCTAAAACGTGTGATACGAAATGACGTTCATTGTCGGTAAGACGTACCCAATCGTCCATG 1547 Query 50443 TCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 50491 ||||| || | ||| || ||||| || |||||||| ||||| || |||| Sbjct 1548 TCTTTGGAGAGATCAACCTCTTCTACGGTCCAAAAGGATGCTTCGGCCT 1596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716623111503800