Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq66438 214 2e-50 >seq66438 Length=2923 Score = 214 bits (236), Expect = 2e-50 Identities = 405/589 (69%), Gaps = 23/589 (4%) Strand=Plus/Plus Query 13698 AGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATT 13757 || || | ||| || | ||| |||||||| | ||||||| | ||||||||| || || Sbjct 901 AGCAAGCGATCCGCCACAAATTCAATATAATCCGACATTAGCTTACAATTCATGCCAATC 960 Query 13758 AGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATA 13817 | || || || | || ||||| ||||||| ||| || || ||||| | Sbjct 961 AAATTCACTGGCAAAGCATCTGTTAAGAATTCTTGTTCAATTTTAACCGCCTCAGC---A 1017 Query 13818 ATAATTGTAATAAT---CTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACAC 13874 || ||| |||||| ||| || || | | | ||||| || || | ||| Sbjct 1018 ATGATTTCAATAATACGCTCCCTACTCGGCTTCTGTACCAAATGTTGGAACATCAGACAA 1077 Query 13875 GCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCT 13934 |||||||||||||| | || ||||| | || || || || || ||||| || || Sbjct 1078 GCAAAATCACAATGTAAACCTTCATCACGCGAGATTAGCTCATTGGAGAATGTCAAGCCG 1137 Query 13935 GGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATT 13994 ||||| | || |||||||| |||||||| || | |||||| ||| ||||||||| Sbjct 1138 GGCATTAGACCACGTTTTTTCAACCAAAAGATCGAAGCAAAACTACCGCTAAAGAATATG 1197 Query 13995 CCCTCAACTGCAGCAAACGCTATTAATCGTTCTCC-AAACGATGCTTTTTTGTTCGATAT 14053 || ||||| |||||||| || || | ||||| || ||| | | ||||| | || || Sbjct 1198 CCTTCAACGGCAGCAAATGCAATGACACGTTCACCAAAATTAGCCGCTTTTGAT-GAGAT 1256 Query 14054 CCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAA 14113 |||| | ||||| |||| || |||| | || ||||||||||||||||| Sbjct 1257 CCATGCTAGTGCCCAATCAGCCTTACGCTTAACGGCAGGGATCGTTTCAATAGCATTAAA 1316 Query 14114 TAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTC 14173 | | |||| || ||| |||||| ||||||||||| | |||||||||||| Sbjct 1317 T--ANTTTCCATC-CTT----------AATGTAGGTATCAATAAGAATGCTATACATTTC 1363 Query 14174 AGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTG 14233 || || | |||||||| ||||| ||||| ||||||||||| | ||||| | ||| Sbjct 1364 TGAATGCACATTTTCCATTGCTATTTGAAAGCCATAAAAGCAACGTGCTTCGGTAATTTG 1423 Query 14234 TACTTC-CGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATC 14281 |||||| || | ||| | ||| | | |||||||||||| |||||||| Sbjct 1424 TACTTCTTGACTGAAA-CGTTCAACTAGATTTTCATTAACAATACCATC 1471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478628853203000