Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq66438 181 1e-40 >seq66438 Length=2923 Score = 181 bits (200), Expect = 1e-40 Identities = 461/694 (66%), Gaps = 27/694 (4%) Strand=Plus/Plus Query 13494 ATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTAC 13553 ||| || | ||| |||||||| | ||||||| | ||||||||| || || | || || Sbjct 909 ATCCGCCACAAATTCAATATAATCCGACATTAGCTTACAATTCATGCCAATCAAATTCAC 968 Query 13554 AGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCTT 13613 || | || ||||| ||||||| ||| || || ||||| ||| || | Sbjct 969 TGGCAAAGCATCTGTTAAGAATTCTTGTTCAATTTTAACCGCCTCAGC---AATGATTTC 1025 Query 13614 AATAATG---TCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATC 13670 |||||| || || || | | | ||||| || || | ||| |||||||| Sbjct 1026 AATAATACGCTCCCTACTCGGCTTCTGTACCAAATGTTGGAACATCAGACAAGCAAAATC 1085 Query 13671 ACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAA 13730 |||||| | || ||||| | || || || || || ||||| || || ||||| | Sbjct 1086 ACAATGTAAACCTTCATCACGCGAGATTAGCTCATTGGAGAATGTCAAGCCGGGCATTAG 1145 Query 13731 TCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAAC 13790 || |||||||| |||||||| || | ||| || ||| ||||||||| || ||||| Sbjct 1146 ACCACGTTTTTTCAACCAAAAGATCGAAGCAAAACTACCGCTAAAGAATATGCCTTCAAC 1205 Query 13791 TGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCT 13850 |||||||| || || | ||||| ||||| || ||| ||| |||||| | Sbjct 1206 GGCAGCAAATGCAATGACACGTTCACCAAAATTAGCCGCTTTTGATGAGATCCATGCTAG 1265 Query 13851 AGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTTC 13910 ||||| |||| || |||| | || ||||| || ||||| |||| | || Sbjct 1266 TGCCCAATCAGCCTTACGCTTAACGGCAGGGATCGTTTCAATAGCATTAAATANTT--TC 1323 Query 13911 CTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTAT 13970 | || ||| |||||| ||||||||||| | |||||||||||| || || | Sbjct 1324 CATC---------CTT--AATGTAGGTATCAATAAGAATGCTATACATTTCTGAATGCAC 1372 Query 13971 GTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTC-CG 14029 ||||| || ||||| ||||| |||||||| || | ||||| | |||||| || | Sbjct 1373 ATTTTCCATTGCTATTTGAAAGCCATAAAAGCAACGTGCTTCGGTAATTTGTACTTCTTG 1432 Query 14030 AGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCA 14089 | | ||| | ||| | | |||||||||||||||||||| || || || || || | Sbjct 1433 ACTGAAA-CGTTCAACTAGATTTTCATTAACAATACCATCGGAGGCGGCGAAGAAAGCTA 1491 Query 14090 ATATGTTTTTAATAAAGTATTGCTCTTCATTGT---TGAGTTTTTTCCAATCGGCTAAAT 14146 | | | | | || | | | || |||||||| | || | ||||||| | | | Sbjct 1492 AAACG--TGTGAT-ACGAAATGACGTTCATTGTCGGTAAGACGTACCCAATCGTCCATGT 1548 Query 14147 CCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14180 | || || ||||| || || || || |||||||| Sbjct 1549 CTTTGGAGAGATCAACCTCTTCTACGGTCCAAAA 1582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477492263323800