Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq114852 531 7e-146 seq66438 212 8e-50 >seq114852 Length=3422 Score = 531 bits (588), Expect = 7e-146 Identities = 1235/1848 (67%), Gaps = 36/1848 (2%) Strand=Plus/Plus Query 70827 TTTCGTACGTAGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCAT 70886 ||| ||||||| ||| |||||||| ||||| || || |||| || |||| || || Sbjct 861 TTTGGTACGTAAATAATACATGCCAGTTTTGAGCCCCGCTTTCCAACCAAAAAAGTGTAT 920 Query 70887 ACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATC 70946 | || |||||| |||| | || || |||| |||||||| | ||| || |||||||| Sbjct 921 AGATGTAAGTTTGCCATAGTTTGGTTCAGCTACATGAATATTAAACGATTGGCTTTGATC 980 Query 70947 GATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAAT 71006 || || || || | || || ||||| || || | |||||| | || ||||| | Sbjct 981 AATAAATGCGCCACGATCGGCTGCCATCTTCATTGTAGTCTTTACCGATATCTCCCACAC 1040 Query 71007 AGTTTTATAAACT-CGCTTAATATCTTCTGGAAGGTTTGTATTC--TGAATGGATCCACC 71063 ||| || |||| | | | || | | | | | | |||| || | || || || |||| Sbjct 1041 AGTCTTGTAAAGTTCACGTATTTTTTGCGGTATTGTTTCAATACCTTGTATTGAACCACG 1100 Query 71064 ATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCT 71123 | | ||||| || |||| || || |||| ||| || ||||| | | | | Sbjct 1101 ACTGGTTATAATTTTAGTTTTCATTTCATCATCCCACAAACCCAATTCGGTAAGATCGCG 1160 Query 71124 AAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATT 71183 | | |||| ||||||| ||||||||||| || || | ||| | |||| | |||||||| Sbjct 1161 TAACAAATGATGATTAACAACTTGAAATTCACCCGATAGTACGCGACGATTATAAATATT 1220 Query 71184 ACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGG 71243 ||||| ||||| | || ||||| || |||| ||||||||||||||||||||| || Sbjct 1221 TGAAGTATAAGGTTCAAAAGATTCATTGTTGCCCATAATTTGAGCAGTTGATGCAGTAGG 1280 Query 71244 CATAGGTGCCACCAATAGACTATTTCTAAGACCATG-TGATCGGATTTTATCTTTTAG-A 71301 ||| ||||||| | || || | | ||||| || | ||||| ||||| | | Sbjct 1281 CATGGGTGCCAAAAGTAAGGAGTTGCGTACGCCATGCTGCTTT-ATTTTCTCTTTCAATA 1339 Query 71302 GATTCCCAATTCCAAAGATCCGATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCG 71361 | ||| | | ||| ||||| | |||| || || Sbjct 1340 CAGTCC-AGTCCCATAGATCGGTTGGTTTTTTATTCCACATATCATATTGGAGTATACCT 1398 Query 71362 TTACTAGCGTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAA 71421 || ||| | ||| ||| | ||||| || || | || | |||||| || | ||||||| Sbjct 1399 TTGCTAACAGGTGAGCCTTCGTATGTTTCATAAGTACCATATTTTTCAGCCAATTCACAA 1458 Query 71422 CTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGA-GATCTTGTGC 71480 || || || ||||| ||||| || || ||||||||||| | | ||| | || |||| Sbjct 1459 CTAGCTTCCAATGCGCCATAGTACATTGTTTCGAAAATTTGTTGATTCAAGA----GTGC 1514 Query 71481 TTCCGG---GCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAAC 71537 || | ||| || |||| ||| | || || || || ||||| || ||||| || Sbjct 1515 AGCCTGCTCGCTCTCGTATGGGTAACGCATAAGGATTAAAGCATCTGCAAAACCTTGTAC 1574 Query 71538 GCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATA 71597 |||||||||||| || | ||||| || || | | | ||| || | ||||||| Sbjct 1575 GCCAATACCGATGGGGCGATGTCTGAAGTTTGATTTCTTTGTTTCGGGCAATGGATAATG 1634 Query 71598 ATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCACATCCTTTA---G 71654 ||| | || ||||||||||| ||||| | || ||| || || |||| | Sbjct 1635 ATTCACTTCGATAATTTTATTTAGATTACGCGTTACGGTCTTGGTAACTTCTTTTAAGCG 1694 Query 71655 TTTGAGAAAATCAAATCTCCCATC---TATTACAAACACGTTCAAGGCAACAGATGCCAG 71711 ||||| |||| || | || | | ||||||| || | |||| ||||| | Sbjct 1695 TTTGA---AATCGTATGACTTTTCGGGTGTAACAAACATATTTAGCGCAATCGATGCTAA 1751 Query 71712 ATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACT 71771 ||||||||| ||||| |||| | | | ||| | | |||||| ||||| | |||||| Sbjct 1752 ATTACAAACAGCTACTTCATCCGGTGCTGAATACTCAACAATTTCTGTGCATAAATTACT 1811 Query 71772 ACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAG 71831 ||| || ||||| || | |||||||||||||||||| ||||| |||||||| || || Sbjct 1812 ACATTTAATGGTGCCAACATTTTGTTGATTACTCTTCCGATTACATGCATCCTTGTACAG 1871 Query 71832 AATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC-GAG 71890 || | || || || || || | || ||||| ||||| || ||| | |||| | | Sbjct 1872 CATGTATGGTGTGCCGGTCTCTACTTGCGATTCAATAATAGCAAACCAAA-GACTTTGTG 1930 Query 71891 CCTTTATTATATTCTTGTATCTCTTTTCTCTT--TCGTATTGTGTATATAATCGTTCGAA 71948 | || | | | || || | | | | ||||| || |||| ||||||||| ||||||| Sbjct 1931 CTTTCACTGTCTTATT--AGCGCGTCCCTCTTGCTCATATTTAGTATATAATTGTTCGAA 1988 Query 71949 CTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTC 72008 ||| || ||||| | | | | |||||||| | | || ||||||| ||||| || Sbjct 1989 CTCATCACCCCATACCTCATGCAGACCAGGACACTTGTGAGGGCACATCAGCGACCAATC 2048 Query 72009 TCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATC 72068 | ||| | | | || ||||||||||| ||||| || ||||| | ||| ||||| ||| Sbjct 2049 TTCATTAGCTTCAACACGTTTCATAAAAAGATCTGGTATCCATAAAGCATAAAATAAATC 2108 Query 72069 TCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATC 72128 ||| | | ||| || || || || || || || || | ||| | ||| | | | ||| Sbjct 2109 TCTAGCACGATGTTCTTCCTTGCCAGTGTTTTTCTTTAAATCCAAAAACTCAAATACATC 2168 Query 72129 AGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATC 72188 | |||||| ||||| || || || || | | || || ||||| || |||||||| Sbjct 2169 TGCATGCCATGGTTCTAAATAGATTGCAAACGCGCCAGGACGTTTACCACCGCCCTGATC 2228 Query 72189 TATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACC 72248 || || | || ||||| | |||||||||||||| | | |||||| |||| || Sbjct 2229 TACATAACGTGCCACATTATTGAATACTCTCAACATTGGTACCAAACCATTCGATGTGCC 2288 Query 72249 ATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTGCTAATTGATAGACCTATT 72306 ||| || |||| || | || || || || || | || |||| || || || Sbjct 2289 ATTTGTACCGGCAATTGCCGTGCCTCTAGCGCGTATACAATGTACATTG--AGTCCAATA 2346 Query 72307 CCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATA 72366 || || || ||| || |||||||| ||| | | | | | | ||||| || || Sbjct 2347 CCACCAGCTGATTTGGAAATTAATGCACATTGATGTGCTGAAGTGAATATGCCATCAATC 2406 Query 72367 CTATCATCCATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGC 72425 ||| | | || ||| ||| ||||| || || | ||| | | || ||| | || Sbjct 2407 GAATCGGCGACCATTGTCAAG-AGAAAGCAAGATGATAGTTGTGGCTGCCTTGTTGCGGC 2465 Query 72426 ATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTC 72485 | || | || || ||||| |||||||| | ||| || |||| |||||| || || Sbjct 2466 AGCGAACAGTGTTGGTGAAGCATGCGTAAAATAACGTTCTGAAAGTAAATTGTATGTTTC 2525 Query 72486 AATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTG 72545 || |||| ||||||||| |||||| || | || |||||||||||||||||||| Sbjct 2526 GATGGCTGCATCTATATCCTCGCCATGTATACCAATGGCAACACGCATTAACATATGCTG 2585 Query 72546 AGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAA 72605 || | ||||| || ||| ||||| | | | ||||| || ||||| |||||||| Sbjct 2586 TGGACGCTCAACAATTTTGCCATTTAATCTGAGTAAGTAAGAACGTTCCAGCGTTTTAAA 2645 Query 72606 ACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATT 72653 ||||||||| || || |||||| || || || |||||| | ||||| Sbjct 2646 ACCAAAATAATTATAACCAAAGTCACGATCATATATAATAGCTGAATT 2693 >seq66438 Length=2923 Score = 212 bits (234), Expect = 8e-50 Identities = 451/668 (68%), Gaps = 22/668 (3%) Strand=Plus/Plus Query 41935 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGA 41994 ||||||||| || || | || ||||| | ||| | || | |||||||||||||| Sbjct 945 ACAATTCATGCCAATCAAATTCACTGGCAAAGCATCTGTTAAGAATTCTTGTTCAATTTT 1004 Query 41995 GACCGCGTCTGTTATAATAG--ATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGT 42052 ||||| || | || || || ||| | || |||||| | | |||||| Sbjct 1005 AACCGCCTCAGCAATGATTTCAATAATACGCTCCCT--ACTCGGCTTCTGTACCAAATGT 1062 Query 42053 TTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTG 42112 | ||||||| ||| || ||||| || || | ||| ||||| | |||| || ||| Sbjct 1063 TGGAACATCAGACAAGCAAAATCACAATGTAAACCTTCATCACGCGAGATTAGCTCATTG 1122 Query 42113 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT 42172 || || || | ||||||||||| ||||| ||||| | |||||| || || ||||| Sbjct 1123 GAGAATGTCAAGCCGGGCATTAGACCACGTTTTTTCAACCAAAAGATCGAAGCAAAACTA 1182 Query 42173 CCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCA 42232 || |||||| || ||||| || || ||||| ||||| | | || ||| || || Sbjct 1183 CCGCTAAAGAATATGCCTTCAACGGCAGCAAATGCAATGACACGTTCACCAAAATTAGCC 1242 Query 42233 C--TGTCATGT-ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTT 42289 | | ||| ||||| | | |||||||| ||||| || || ||| |||||| Sbjct 1243 GCTTTTGATGAGATCCATGCTAGTGCCCAATCAGCCTTACGCTTAACGGCAGGGATCGTT 1302 Query 42290 TCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAA 42349 || || |||||||| || ||| | ||| |||| || ||||| || | | Sbjct 1303 TCAATAGCATTAAA----TANTTT---------CCATCCTTAATGTAGGTATCAATAAGA 1349 Query 42350 AGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTG 42409 | ||||||||||||||||| | ||||| || || || ||||| || || || || | Sbjct 1350 ATGCTATACATTTCTGAATGCACATTTTCCATTGCTATTTGAAAGCCATAAAAGCAACGT 1409 Query 42410 GCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCG 42469 || ||||||| ||||||||| || || |||||| ||| |||||| || || || || Sbjct 1410 GCTTCGGTAATTTGTACTTCTTGACTGAAACGTTCAACTAGATTTTCATTAACAATACCA 1469 Query 42470 TCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTA-A 42528 || ||| || || || || || || ||| || |||| ||| | || | | Sbjct 1470 TCGGAGGCGGCGAAGAAAGCTAAAACGTGTGATACGAAATGACGTTCATTGTCGGTAAGA 1529 Query 42529 TTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGC 42588 || |||||| | || ||||| || | ||| || |||||||| |||||||| ||||| Sbjct 1530 CGTA-CCCAATCGTCCATGTCTTTGGAGAGATCAACCTCTTCTACGGTCCAAAAGGATGC 1588 Query 42589 TTCTGCCT 42596 ||| |||| Sbjct 1589 TTCGGCCT 1596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 669601494254200