Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq114852 114 1e-20 >seq114852 Length=3422 Score = 114 bits (126), Expect = 1e-20 Identities = 473/741 (64%), Gaps = 35/741 (5%) Strand=Plus/Plus Query 156494 TTGACAACTTGAAATTCGCCCGACAAAACACGTC--TCAAAAACAAATTACTGTGAAACG 156551 || |||||||||||||| ||||| | || || | | | ||| | | | || || | Sbjct 1174 TTAACAACTTGAAATTCACCCGATAGTACGCGACGATTATAAATATTTGAA-GTATAA-G 1231 Query 156552 GTTCAAATGACTCGTTGTTGTTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCCA 156611 ||||||| || || |||||| | ||||| || || | || || |||||| |||| Sbjct 1232 GTTCAAAAGATTCATTGTTGCCCATAATTTGAGCAGTTGATGCAGTAGGCATGGGTGCCA 1291 Query 156612 CAAGCAATGAATTACGTAATCCGTATTTTTGTATATTTATTTTCAACTGTGACCAGTCCC 156671 ||| || || || |||| || | | | ||| || |||||| | |||||||| Sbjct 1292 AAAGTAAGGAGTTGCGTACGCCATGCTGCTTTATTTTCTCTTTCAATACAGTCCAGTCCC 1351 Query 156672 ATAACGAAGTCGGTACCGTATTCCACAAATCGTATTGCAATATTCCTTCGCTCGCTTTGC 156731 ||| || ||| ||||||||| ||| ||||| | ||| |||| ||| | Sbjct 1352 ATAGATCGGTTGGTTTTTTATTCCACATATCATATTGGAGTATACCTTTGCTAACAGGTG 1411 Query 156732 TACCGGCAAACGTGCTATAAGGCTCACTAACAGAT------GCCAGTTCGTAACTGGCCT 156785 || | | || ||||| || || || |||| ||| |||| || | Sbjct 1412 AGCCTTCGTATGTTTCATAAG------TACCATATTTTTCAGCCAATTCACAACTAGCTT 1465 Query 156786 CGAGCGCAGCATGATACACAGTTTCAGCAATTTGTTTATTCAATAGAACGGCAGCATCGC 156845 | | || ||| |||| ||||| |||||||| |||||| || | || |||| Sbjct 1466 CCAATGCGCCATAGTACATTGTTTCGAAAATTTGTTGATTCAAGAGTGCAGCCTGCTCGC 1525 Query 156846 TCACGTACGGTATGCGCAACATAACAAATGCATCGGCCAAACCTTGAATGCCAATGCCGA 156905 || |||| || |||| | | || ||||| || |||||||| | |||||| |||| Sbjct 1526 TCTCGTATGGGTAACGCATAAGGATTAAAGCATCTGCAAAACCTTGTACGCCAATACCGA 1585 Query 156906 TGGGACGATGGCGCATATTAGAtttttttGCAGTTTC----AATAGGGTAGAAATTGCGA 156961 |||| ||||| | | || ||||| |||| |||| ||| || || ||| Sbjct 1586 TGGGGCGATGTCTGAAGTTTGATTTCTTTG---TTTCGGGCAAT-GGATAATGATTCACT 1641 Query 156962 TCAATAATTTTATTCAAACTATCCACTACATGTTTGACCACAGTGTGCAATAGTTGAAAA 157021 || ||||||||||| | | || | ||| ||| || | || ||| ||| Sbjct 1642 TCGATAATTTTATTTAGATTACGCGTTACGGTCTTGGTAACTTCTTTTAAGCGTTTGAAA 1701 Query 157022 TCAAAAGTATCATTATTG-------ATATATTTATTGACGGCAATCGACGCTAGATTACA 157074 || |||| | | || | | | |||| | |||||||| |||| |||||| Sbjct 1702 TC----GTATGACTTTTCGGGTGTAACAAACATATTTAGCGCAATCGATGCTAAATTACA 1757 Query 157075 TACGGCAGTTTCGTCGGGCGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTT 157134 || || ||| || || || |||| | || ||||| | || ||||| || ||||| Sbjct 1758 AACAGCTACTTCATCCGGTGCTGAATACTCAACAATTTCTGTGCATAAATTACTACATTT 1817 Query 157135 TATCAATCCGCAATTACTTTGATTGCTTTTGCGGTTGCAAGCGTCCTTGTATAACATGTA 157194 || || ||| |||||| || || || || || || |||||||| | |||||| Sbjct 1818 AATGGTGCCAACATTTTGTTGATTACTCTTCCGATTACATGCATCCTTGTACAGCATGTA 1877 Query 157195 CGGTGTGCCGGTTTCGGCTTG 157215 ||||||||||| || |||| Sbjct 1878 TGGTGTGCCGGTCTCTACTTG 1898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505852734944400