Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq66438 154 2e-32 seq128143 122 1e-22 >seq66438 Length=2923 Score = 154 bits (170), Expect = 2e-32 Identities = 487/742 (66%), Gaps = 45/742 (6%) Strand=Plus/Minus Query 125038 AGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATT 125097 |||| | || ||||||||||| || |||||||| ||||| ||||| ||| || |||||| Sbjct 1596 AGGCCGAAGCATCCTTTTGGACCGTAGAAGAGGTTGATCTCTCCAAAGACATGGACGATT 1537 Query 125098 GGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTG 125157 ||| ||| | || || | ||| || | || |||| ||| |||| || ||||| | Sbjct 1536 GGG---TACGTCTTACCGACAATGAACGTCATTTCGTATCACACGTTTTAGCTTTCTTCG 1480 Query 125158 CCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACGATTCTCTCAAGAGTTGACC 125216 ||| ||||||||| || || || || ||||| ||||| ||| ||| |||||| | Sbjct 1479 CCGCCTCCGATGGTATTGTTAATGAAAATCTAGTTGA-ACGTTTCAGTCAAGAAGTACAA 1421 Query 125217 ATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAA 125276 ||| | || | |||||||| || || ||||| || || || ||||| || ||| Sbjct 1420 ATTACCGAAGCACGTTGCTTTTATGGCTTTCAAATAGCAATGGAAAATGTGCATTCAGAA 1361 Query 125277 ATGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAACGTAAACACATGCTCTTT 125336 ||||| | || ||||| | |||||| ||| | ||| | ||| Sbjct 1360 ATGTATAGCATTCTTATTGATACCTACATTAAGGAT-------GGAAA------NTATTT 1314 Query 125337 AACGCAATCGACACG----GTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTG 125392 || || || || ||| |||||| || ||| |||||| | |||| | || Sbjct 1313 AATGCTATTGAAACGATCCCTGCCGT-TAAGCGT---AAGGCTGATTGGGCACTAGCATG 1258 Query 125393 GATC-GATGA----CGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTA 125447 |||| || | || | | | || || || | | | ||||| || ||||| Sbjct 1257 GATCTCATCAAAAGCGGCTAATTTTGGT-----GAACGTGTCATTGCATTTGCTGCCGTT 1203 Query 125448 GAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTC 125507 || ||||| |||||| ||||||||||| | ||||||||| | || || || || || Sbjct 1202 GAAGGCATATTCTTTAGCGGTAGTTTTGCTTCGATCTTTTGGTTGAAAAAACGTGGTCTA 1143 Query 125508 ATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGAC 125567 |||||||| |||| | || ||| | || || || || || || |||| ||||| Sbjct 1142 ATGCCCGGCTTGACATTCTCCAATGAGCTAATCTCGCGTGATGAAGGTTTACATTGTGAT 1083 Query 125568 TTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAG 125627 ||||| ||| |||| |||| || || || | || || || || || | Sbjct 1082 TTTGCTTGTCTGATGTT--CCAAC-ATTTG-GTACAGA-AGCCGA-GTAGGGAGCGTA-- 1031 Query 125628 GTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTA 125687 | || | || | | || || || | || |||||||| || |||| || | | Sbjct 1030 -TTATTGAAATCATTGCTGAGGCGGTTAAAATTGAACAAGAATTCTTAACAGATGCTTTG 972 Query 125688 CCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCA 125747 || || | ||||||||||||| || |||||||||| || || || || |||||||| Sbjct 971 CCAGTGAATTTGATTGGCATGAATTGTAAGCTAATGTCGGATTATATTGAATTTGTGGCG 912 Query 125748 GATCGTCTACTGTACGAGTTGA 125769 ||||| | ||| |||| ||| Sbjct 911 GATCGCTTGCTGGTCGAGCTGA 890 >seq128143 Length=5596 Score = 122 bits (134), Expect = 1e-22 Identities = 288/433 (67%), Gaps = 4/433 (1%) Strand=Plus/Minus Query 70193 AATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCACCAAATG 70252 ||||||| ||| | | ||| |||||| |||||||||||| ||| | | |||||| Sbjct 1462 AATCCAAATGATCGACGCATCATAATGTCTGCATGGAATCCTGTTGATATACCACAAATG 1403 Query 70253 GCACTACCACCGTGTCACTGTTTGGCTCAGTTTTACTCGT--ACGATGGCAAATTGTCAT 70310 ||| ||||||| ||||| ||| |||| || |||| |||| | | || | | |||| Sbjct 1402 GCATTACCACCATGTCATTGTCTGGCGCAATTTT--TCGTTGCCAACGGTGAGCTATCAT 1345 Query 70311 GCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATTGCAAGCT 70370 | | | || || | || ||||| ||||| | ||||| || || || ||||| || Sbjct 1344 GTCAATTATACCAACGTAGCGCCGATATGGGTTTGGGTGTGCCATTCAATATTGCTTCCT 1285 Query 70371 ATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCGCACGAGTTCGTAC 70430 || || || | || |||||||||| || || || || || | || || || | Sbjct 1284 ATGCTCTGCTTACTTACATGATTGCACATATAACAGGACTTCGGCCTGGAGACTTTGTTC 1225 Query 70431 ACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTAAAGGTGCAACTCG 70490 | || | ||||| | || || ||| || |||||| |||||| | |||| ||| | Sbjct 1224 ATACTTTGGGCGATACGCATGTCTATAAAAGTCACATTGAGCCACTGAAGGAACAATTAT 1165 Query 70491 AACGGGAGCCGAGACCTTTTCCCAAGCTGGAGTTTGCTCGTAAAGTTGAAAATATTGACA 70550 ||| |||| | || || || || || || || | || |||||||||| Sbjct 1164 TACGAAAGCCACGCCCATTCCCGAAACTAACTATTAAGCGAGATGTGAAAAATATTGAAG 1105 Query 70551 GTTTTAAGTACGAAGATTTTATAATAAAAGGTTACGATCCATACCCTAAGATTCCCATGG 70610 |||||| | ||| |||||| ||| | ||| | || || ||||| || |||||| Sbjct 1104 ATTTTAAATTCGATGATTTTGAAATTGTTGACTACAAACCGTATCCTAAAATAGCCATGG 1045 Query 70611 TTCTGGCTGTTTA 70623 |||||||||| Sbjct 1044 AAATGGCTGTTTA 1032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 739361294424200