Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_005083.2 Length=244834 Score E Sequences producing significant alignments: (Bits) Value seq183243 84.2 3e-11 >seq183243 Length=6229 Score = 84.2 bits (92), Expect = 3e-11 Identities = 163/236 (69%), Gaps = 6/236 (3%) Strand=Plus/Minus Query 70975 TGTGAGCATCACATCGTAACAATCGACGGCTTTGCCACTGTCGCATACATTCCGAAGAAC 71034 || ||||||||| | |||| || ||||| || || || || || || || || | Sbjct 2144 TGCGAGCATCACTTTGTAATTATTGACGGTCAAGCAACAGTGGCTTATATCCCCAAAGAT 2085 Query 71035 AAAGTTCTTGGTCTGTCGAAAATGAATCGCATCGTTGAGTACTTCGCTCGTCGTCCGCAG 71094 || || |||||||||| ||||| || || || || ||| ||| | ||| || || Sbjct 2084 AAGGTAATTGGTCTGTCAAAAATTAACCGAATTGTACAGTTCTTTTCATCTCGCCCACAA 2025 Query 71095 ATTCAAGAACGTCTGACTGTTCAAATC--GCTGAAGCACTGAAGTTCATT-CTTGAAACT 71151 || |||||||| || ||| ||||| |||| |||||| | |||| |||| ||| Sbjct 2024 ATACAAGAACGCCTAACTCAGCAAATTTTGCTG--GCACTGCAAA-CATTGCTTGGTACT 1968 Query 71152 GAAGACGTAGCGGTATTGATCGACGCCAAACACTATTGCGTGAAAGCACGCGGTGT 71207 | | || || || | || || || | ||||||||| ||||||||||| || || Sbjct 1967 AACAATGTTGCTGTCTCTATTGATGCTATACACTATTGTGTGAAAGCACGTGGGGT 1912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 781546019350800