Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq66438 179 3e-40 >seq66438 Length=2923 Score = 179 bits (198), Expect = 3e-40 Identities = 470/706 (67%), Gaps = 25/706 (4%) Strand=Plus/Plus Query 12986 TCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTTACA 13045 || || ||||| || || || | ||||| | ||| ||||| || || || || || Sbjct 910 TCCGCCACAAATTCAATATAATCCGACATTAGCTTACAATTCATGCCAATCAAATTCACT 969 Query 13046 GGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATGTCTCTT 13105 |||| ||| |||||||| || | || ||| || | ||| || || || || || | Sbjct 970 GGCAAAGCATCTGTTAAGAATTCTTGTTCAATTTTAACCGCCTCAGCAATGATTTCAATA 1029 Query 13106 ATTACGTTCTCTAAT-GGAGGATTTGATAGATGCTTAAACATCATACATGCAAAATCACA 13164 || ||| || ||| | || | | | ||| | ||||||| ||| ||||||||||| Sbjct 1030 AT-ACGCTCCCTACTCGGCTTCTGTACCAAATGTTGGAACATCAGACAAGCAAAATCACA 1088 Query 13165 GTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCC 13224 || || |||||||| | |||||||| || || ||||| | || ||||| || || Sbjct 1089 ATGTAAACCTTCATCACGCGAGATTAGCTCATTGGAGAATGTCAAGCCGGGCATTAGACC 1148 Query 13225 TCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGC 13284 |||||||| | |||||| || | |||||| ||| ||| ||||| |||||||| || Sbjct 1149 ACGTTTTTTCAACCAAAAGATCGAAGCAAAACTACCGCTAAAGAATATGCCTTCAACGGC 1208 Query 13285 TGCAAACGCTATCAACCTTTCACCATACGTA-CTATTTTTACTCTCTATCCACTTTCTGG 13343 ||||| || || | | ||||||| | || | |||| | ||||| | | Sbjct 1209 AGCAAATGCAATGACACGTTCACCAAAATTAGCCGCTTTTGAT-GAGATCCATGCTAGTG 1267 Query 13344 CCCAGTTTGCTTTTTGTTTAAC-GCAGTTCATATTTTCTATTGCGTTAAATAAATAAttt 13402 |||| | || || | ||||| |||| || |||| || || ||||||| Sbjct 1268 CCCAATCAGCCTTACGCTTAACGGCAG-GGATCGTTTCAATAGCATTAAATA-------- 1318 Query 13403 ttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATA 13462 ||||| | || ||| || ||||| || | | |||||||||||||||||| | | Sbjct 1319 NTTTCCATCCT-----TAATGTAGGTATCAATAAGAATGCTATACATTTCTGAATGCACA 1373 Query 13463 TTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC-GGA 13521 |||||||| |||||||| || |||||||| || | || || | | || ||||| || Sbjct 1374 TTTTCCATTGCTATTTGAAAGCCATAAAAGCAACGTGCTTCGGTAATTTGTACTTCTTGA 1433 Query 13522 GTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAG 13581 | ||| | ||| ||| ||||| ||||| || || || || || || ||||| | Sbjct 1434 CTGAAA-CGTTCAACTAGATTTTCATTAACAATACCATCGGAGGCGGCGAAGAAAGCTAA 1492 Query 13582 TATGTGCTTAATA--AAttttttttCGTTTTCTGACAACTTTAACCAATCTGGAAAATCT 13639 | ||| | ||| || | ||| || || | | || |||||| | ||| Sbjct 1493 AACGTG--TGATACGAAATGACGTTCATTGTCGGTAAGACGTACCCAATCGTCCATGTCT 1550 Query 13640 TTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCT 13685 || || | ||| ||||| || ||||||||||| || || | |||| Sbjct 1551 TTGGAGAGATCAACCTCTTCTACGGTCCAAAAGGATGCTTCGGCCT 1596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430019625049590