Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq157162 163 7e-35 seq66438 131 4e-25 >seq157162 Length=2207 Score = 163 bits (180), Expect = 7e-35 Identities = 165/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 104350 TACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTC 104409 ||| | ||| | ||| ||||| || || ||||| ||||| |||||||| | || ||||| Sbjct 598 TACCAAATGAAGTGTTGATTCCTTTTGGATATTGTAGTCGGATAGAGTACGTCCATCTTC 539 Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469 | |||||| || || |||||||| | |||||||| || || || |||||||||||||| Sbjct 538 CAATTGTTTGCCGGCGAAAATTAGACGTTGTTGATCTGGTGGGATACCTTCTTTATCCTG 479 Query 104470 AATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529 ||| || ||||| |||||||| | ||| || || || ||||| | || || ||||| Sbjct 478 AATTTTAGCTTTGACATTTTCAATGGTGTCCGATGGCTCGACCTCCAAAGTGATGGTCTT 419 Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCATTTTGT 104564 ||||| |||||||| || || || |||||| ||| Sbjct 418 GCCAGTTAGTGTTTTAACGAAAATTTGCATTGTGT 384 >seq66438 Length=2923 Score = 131 bits (144), Expect = 4e-25 Identities = 356/539 (66%), Gaps = 20/539 (4%) Strand=Plus/Minus Query 268751 CAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGAT 268810 ||||||| || || |||||||| |||||||| || ||||| || | ||| | ||| Sbjct 1597 CAGGCCGAAGCATCCTTTTGGACCGTAGAAGAGGTTGATCTCTCCAAAGACATGGACGAT 1538 Query 268811 TGGAAAAATTTAAAACCAGAAGAAAGAAGATTTA-TATCTTATATTCTTGCGTTTTTTGC 268869 ||| | | | | | | || || |||| |||| | || | || || || || Sbjct 1537 TGGGTACGTCTTAC-CGACAATGAACGTCATTTCGTATCACACGTTTTAGCTTTCTTCGC 1479 Query 268870 AGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGAT 268929 | |||||||| ||||| ||||||||||| || ||| ||||||| ||||| || Sbjct 1478 CGCCTCCGATGGTATTGTTAATGAAAATCTAGTTGAACGTTTCAGTCAAGAAGTACAAAT 1419 Query 268930 TCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGAT 268989 | | ||||| | || ||||| || || || ||||| || |||||| | |||||||| || Sbjct 1418 TACCGAAGCACGTTGCTTTTATGGCTTTCAAATAGCAATGGAAAATGTGCATTCAGAAAT 1359 Query 268990 GTACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTC 269049 ||| || | | || ||||| || || | ||| ||| | ||||| Sbjct 1358 GTATAGCATTCTTATTGATACCTACATTAAGGAT-----GGAA--------ANTATTTAA 1312 Query 269050 TTCTATGAGAACTATGGACTG-TGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGA--T 269106 | |||| ||| || ||| || | || |||| ||||| || ||||| | Sbjct 1311 TGCTATTGAAACGAT-CCCTGCCGTTAAGCGTAAGGCTGATTGGGCACTAGCATGGATCT 1253 Query 269107 AAACGATAGC-GCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATAT 269165 | | | ||| || || || ||| | | |||| ||||| || || ||||| |||| Sbjct 1252 CATCAAAAGCGGCTAATTTTGGTGAACGTGTCATTGCATTTGCTGCCGTTGAAGGCATAT 1193 Query 269166 TCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGAT 269225 ||||| || |||||| | |||||||||||||| ||| | || || ||||| || | Sbjct 1192 TCTTTAGCGGTAGTTTTGCTTCGATCTTTTGGTTGAAAAAACGTGGTCTAATGCCCGGCT 1133 Query 269226 TAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGT 269284 | || ||||| || || | || | || ||||||||||| || || || |||||| Sbjct 1132 TGACATTCTCCAATGAGCTAATCTCGCGTGATGAAGGTTTACATTGTGATTTTGCTTGT 1074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1148694378637860