Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_005344.1 Length=39043 Score E Sequences producing significant alignments: (Bits) Value seq183115 134 3e-27 >seq183115 Length=3769 Score = 134 bits (148), Expect = 3e-27 Identities = 195/275 (71%), Gaps = 3/275 (1%) Strand=Plus/Minus Query 21551 ATTGCCTCCTTGCTTGCCACCA---AGCATTTGCATGGTTCCACCAACGCCTACGATAAC 21607 ||||||||| || ||| || | ||||| ||||| || || ||||| ||| || || Sbjct 2734 ATTGCCTCCCTGACTGCGACTACCCAGCATCTGCATAGTGCCTCCAACATTTACTATTAC 2675 Query 21608 TTCGGTAGTGAACCTATCCTGTCCGCTTTGATCCTGCCATTTTCTTGTCCGCAATTTGCC 21667 ||| ||||| | | || || |||||| |||||| | || ||| | ||| Sbjct 2674 TTCAGTAGTATATTTTTCAACCCCTGCTTGATCAGTCCATTTACGAGTTTGCAGTGCGCC 2615 Query 21668 TTCAAGATAAACCTCAGAGCCTTTTCGCAGATATTCGCTGGCAATTTCTGCCAGTTTCCC 21727 ||||| |||||||| ||||||||| || ||||| || | |||| ||| ||||| || || Sbjct 2614 TTCAATATAAACCTGAGAGCCTTTGCGAAGATACTCACCAGCAACTTCAGCCAGCTTGCC 2555 Query 21728 GCTCATTACCACGCGGTGCCACTCCGTCTGCTCCTTTTGCTCTCCAGTTTGCTTATCACG 21787 || || | ||||||||||| |||| ||| || || ||||||||||| ||||| Sbjct 2554 AAACAAAACAATACGGTGCCACTCGGTCTTCTCTTTAGTTTCCCCAGTTTGCTTGTCACG 2495 Query 21788 CCATTGTTCTGACGTAGCAACTGTAAGGTTTGCAA 21822 ||| |||||| ||||| | || | ||| |||| Sbjct 2494 CCAGCTTTCTGAAGTAGCCAGCGTGATGTTGGCAA 2460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124544321983950