Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_005856.1 Length=94800 Score E Sequences producing significant alignments: (Bits) Value seq182134 547 4e-151 seq183115 134 8e-27 >seq182134 Length=1323 Score = 547 bits (606), Expect = 4e-151 Identities = 895/1281 (70%), Gaps = 14/1281 (1%) Strand=Plus/Minus Query 71361 TTAATGCTTGATAACTGCCGCTGGGATGAAGTTGCAGATCGTATAGTTGCTGATGATTTT 71420 |||||||| |||||| ||||||||| | || | || ||| | || || | |||||| Sbjct 1323 TTAATGCTAGATAACGAACGCTGGGATAATATTTCTGAGCGTGTGGTGGCGAAAGATTTT 1264 Query 71421 TATACCAGTGCTCATCGTGAAATTTTCAGTGAGATGGAGAGGTTATTAAGTCATGGCAAA 71480 | | | | | ||||| || |||| |||||| ||| ||||| || || ||| Sbjct 1263 TTCAACCGGTCCCATCGCATGATCTTCATGGAGATGCAGAAATTATTGGAACAGGGTAAA 1204 Query 71481 CCGATTGATTTGATAACACTTGCTGAAGCACTTGAACAGAACGGTAAATT-AGAACGCGC 71539 || |||||| || || || ||||| | | ||| ||| || | | || | | | Sbjct 1203 CCAATTGATCCAATTACCCTCTCTGAATCGATGGAAACGAAAGGCGAGCTGAGTATG-GT 1145 Query 71540 CGGTGGTTTTGCGTACCTTGCGGAGATGTCAAAGAACACGCCCAGCTCGGCAAATATTTG 71599 ||||| || || || || || ||| | ||||| || ||||| || |||| ||||| | Sbjct 1144 TGGTGGATTCGCCTATCTCGCTGAGCTATCAAAAAATACGCCAAGTGCGGCTAATATAGG 1085 Query 71600 TGCTTATGCGGATATCGTTCGTGAACGCGCGGTTGTTCGTGAAATGATTTCCGTCGCAAA 71659 ||||||||| ||||| || || ||||| || |||| ||||| ||||| | || ||||| Sbjct 1084 TGCTTATGCAGATATAGTGCGCGAACGAGCAATTGTGCGTGAGATGATCGCTGTAGCAAA 1025 Query 71660 TGAAATAGCCGAAGCTGGATATGCGCAGGATGGCAGGGGCAGCAATGAATTGCTGGATAT 71719 |||||| || || ||||| || | | | || | ||||| | || ||||| ||| | Sbjct 1024 TGAAATTGCAGATGCTGGTTACGATCCACAGGGACGTAGCAGCGAAGATTTGCTCGATCT 965 Query 71720 GGCCGAGCGCCGCGTTTTTGAAATAGCTGAAAAACGAC--AAAAGAGCGGTAGTGGTCCA 71777 || || ||||| ||| | || || || || || || | || || || | ||| Sbjct 964 TGCGGAATCACGCGTGTTTCAGATCGCGGAGAACAGAACTAATAAAGAGGCAG--GCCCA 907 Query 71778 AAAGATATCGCCAGCATTCTCGATGCAACGGTATCTCGCATAGAAGAGTTGTTTCAGCGA 71837 ||| || | || ||||| ||||| | || || || ||| ||| || Sbjct 906 AAAAGCATTGATCAAATCCTCGAAGCAACTATTTCACGTATTGAATTACTGTACCAAACG 847 Query 71838 CCACATGATGGTGTAACGGGGCTTGATACGGGATTTACCGATCTCAATAAGAAGACGGCA 71897 |||||||||||||| || ||||||||||| |||| | ||| | ||||| ||||| || Sbjct 846 CCACATGATGGTGTTACTGGGCTTGATACCGGATATCAGGATTTGAATAAAAAGACTGCT 787 Query 71898 GGGCTTCAGCCGTCCGATCTCATCATTGTCGCCGCCCGCCCATCTATGGGGAAGACCACG 71957 || | || | || ||| | || ||||| || ||||| || || ||||| || |||||| Sbjct 786 GGATTGCAACGCTCAGATTTGATTATTGTTGCTGCCCGTCCGTCAATGGGCAAAACCACG 727 Query 71958 TTTGCGATGAATCTCGTCGAAAATGCCGCAGTTCGTA-ACGATAAGCCCGTATTGGTTTT 72016 || ||||||||||| ||||||||||| | | ||| | || || || || ||| | || Sbjct 726 TTCGCGATGAATCTGTGTGAAAATGCCGC-GATGGTACAGGAAAAACCAGTGTTGATCTT 668 Query 72017 TAGCCTTGAGATGCCGAGCCACCAGCTGATGATGCGCTCACTGGCTTCTCTTGCACGCGT 72076 |||| | |||||||| || | || | |||||||| | ||||||| | || || Sbjct 667 TAGCTTAGAGATGCCTGGCGAACAAATCATGATGCGTATGTTATCTTCTCTGTCTCGTGT 608 Query 72077 TGATCAGACTCGTATTCGGACAGGGCAACTTAACGACGAGGATTGGGCGCGGGTTTCTGG 72136 |||||| || |||||||| ||||| || || | || |||||||||||||| | || | Sbjct 607 TGATCAAACGCGTATTCGAACAGGTCAGCTCGATGATGAGGATTGGGCGCGTATCTCCAG 548 Query 72137 CGCAATGGGTATTCTGTTGGACAAGCAGAATATTTTTATTGATGACTCAAGCGCCCTGAC 72196 | |||||| || || |||| || | || || ||||| |||||||| | || || Sbjct 547 TACTATGGGTCTTTTGCTGGAGAAAAAAAACATGTTTATAGATGACTCCTCTGGTCTAAC 488 Query 72197 GCCGACAGAGCTACGTTCCCGCGCTCGTCGTGTTTATAAAGAAAATGGTGGTTTGAGCAT 72256 || || ||| | ||| | ||| | ||||| || | || | ||||| || ||||| Sbjct 487 ACCAACCGAGATGCGTGCTCGCTCGCGTCGAGTCTTCCGTGAGCACGGTGGCTTAAGCAT 428 Query 72257 GATTATGATCGACTACCTGCAACTTATGCGCGTCCCCGAGCTGCAAGATAACCGAACGCT 72316 ||| ||||| ||||| || || | ||||| || || | ||| ||||| || ||| | Sbjct 427 GATCATGATTGACTATCTTCAGTTGATGCGTGTTCCGGCGCTATCTGATAATCGCACGTT 368 Query 72317 GGAAATTGCCGAGATTTCTCGCTCACTGAAGGCGTTGGCGAAGGAATTACAAGTACCGGT 72376 || || || || || || ||||| |||||| | | ||||| || | ||||| ||||| Sbjct 367 AGAGATCGCTGAAATCTCACGCTCGCTGAAGTCACTAGCGAAAGAGCTGCAAGTGCCGGT 308 Query 72377 GGTGGCATTGTCACAACTTAATCGATCGCTTGAACAGCGTGCGGACAAACGACCGGTAAA 72436 ||| |||||||| || ||||| || ||||| |||||||| || |||||||| ||||| || Sbjct 307 GGTAGCATTGTCGCAGCTTAACCGCTCGCTGGAACAGCGAGCAGACAAACGTCCGGTTAA 248 Query 72437 TTCAGATTTACGTGAATCAGGAGCAATTGAGCAGGACGCAGACCTGATTATGTTTCTGTA 72496 || ||||| |||||||| || | |||||||| || || || | |||||||| | || Sbjct 247 CTCCGATTTGCGTGAATCTGGTTCCATTGAGCAAGATGCTGATTTAATTATGTTCATCTA 188 Query 72497 TCGCGACGAAGTTTATCACCCGGATAGCGAAATGAAGGGCATTGCCGAGGTAATTATC-- 72554 |||||| ||||| ||||| |||| | | || || ||||||| ||||||| Sbjct 187 TCGCGATGAAGTATATCATGAAAATAGTAATCTCAAAGGGGTTGCCGA---AATTATCCT 131 Query 72555 -GGAAAGCAACGAAATGGCCCAATTGGCACGGTGAGATTGGCTTTTAACGGCCAATACTC 72613 || || ||||| || ||||| || || || ||| | || | |||||||| || | || Sbjct 130 AGGCAAACAACGTAACGGCCCCATCGGGACAGTGCGCTTAACCTTTAACGGTCAGTGGTC 71 Query 72614 ACGGTTTGATAACTATGCCGG 72634 || |||||||||||||| || Sbjct 70 TCGTTTTGATAACTATGCTGG 50 >seq183115 Length=3769 Score = 134 bits (148), Expect = 8e-27 Identities = 224/324 (69%), Gaps = 0/324 (0%) Strand=Plus/Plus Query 21063 GGTGTAAACAAAGTCATCCTGATTGGTACCCTGGGGCAAGACCCGGAGATCAGGTATATA 21122 ||| |||||||||| || | |||| | ||||| ||||||||||| | | || || Sbjct 2384 GGTATAAACAAAGTAATTTTAGTTGGAAATCTGGGTCAAGACCCGGAAGTTCGCTACATG 2443 Query 21123 CCAAATGGCGGCGCGGTCGGAAGACTCAGCATCGCAACGAATGAATCATGGCGCGACAAG 21182 || |||||||| || || | | ||| | || || ||| ||||| |||||| Sbjct 2444 CCGAATGGCGGTGCTGTTGCCAACATCACGCTGGCTACTTCAGAAAGCTGGCGTGACAAG 2503 Query 21183 CAAACGGGCCAACAGAAAGAGCAAACAGAATGGCATAAAGTCGTTTTGTTCGGAAAACTT 21242 ||||| || || |||||| | || || ||||| | |||||||| || || || Sbjct 2504 CAAACTGGGGAAACTAAAGAGAAGACCGAGTGGCACCGTATTGTTTTGTTTGGCAAGCTG 2563 Query 21243 GCTGAAATTGCGAGTGAGTATTTACGAAAAGGTTCTCAGGTCTACATCGAAGGGAAACTT 21302 |||||| |||| |||||||| | || ||||| |||||||| || || ||||| ||| Sbjct 2564 GCTGAAGTTGCTGGTGAGTATCTTCGCAAAGGCTCTCAGGTTTATATTGAAGGCGCACTG 2623 Query 21303 AAAACCCGTAAGTGGACAGATGACGCCGGTGTAGAACGTTACACGACGGAAATTATCGTC 21362 |||| ||||| ||||| ||| | || || || ||| || || || ||| | || || Sbjct 2624 CAAACTCGTAAATGGACTGATCAAGCAGGGGTTGAAAAATATACTACTGAAGTAATAGTA 2683 Query 21363 AGCCAGGGCGGCACCATGCAAATG 21386 | || ||||| ||||| ||| Sbjct 2684 AATGTTGGAGGCACTATGCAGATG 2707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 302557800517695