Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq183117 159 4e-34 seq128971 134 2e-26 seq128143 129 7e-25 seq32924 84.2 3e-11 >seq183117 Length=3786 Score = 159 bits (176), Expect = 4e-34 Identities = 246/345 (71%), Gaps = 7/345 (2%) Strand=Plus/Plus Query 6700 GGATGAGGATTATAATCTAACAATTCAAAATCTTCAAATTTAAAATCACATAAATTATCA 6759 |||| |||| ||| | | |||| |||||||||||||||||||| | |||||||| | Sbjct 2711 GGATATGGATCATATTGTTCTAATTTAAAATCTTCAAATTTAAAATTAAATAAATTAGTA 2770 Query 6760 GACtttttttttAAT-ATTACAACAGGTGAAGGTTTTATTGATCGAGTTAATTGTTCTTT 6818 | ||||| ||||| | || || || | | |||| | || | |||||||||| || Sbjct 2771 -ATATTTTTATTAATAACTAAAATTGGCAATGATTTTGGTTTTCTACTTAATTGTTCATT 2829 Query 6819 TATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAGCGTATGAATAAATTCACC 6878 || | | ||||| ||||||||||||||| |||| |||||||||||||| || Sbjct 2830 AATTTGTGAAAAATGATTACTATAAATATGAGCATCACCTAAAGTATGAATAAATTCTCC 2889 Query 6879 TGGTTTCATATCAACA-GCTTGAGCAATTAAATATGTTAATAATGCATAAGAAGCTACAT 6937 | | | ||| | ||| ||| || | | ||||||||||||||||||||| | || Sbjct 2890 TAG-CTGATAGCCACATATTTGTGCTAACATTATTGTTAATAATGCATAAGAAGCAATAT 2948 Query 6938 TAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACATTGACAAGATAAAATAT 6997 ||||||| || ||||| |||||||| | |||||| ||||||||||||| | | Sbjct 2949 TAAAAGGAACTCCTAAAAAAATATCTGCACTACGTTGATATAATTGACAAGATAATTTTT 3008 Query 6998 TGTCTATAG---CATAAAATTGACACAATACATGACATGGAGGTA 7039 | || || | ||||||||| || ||||||||| |||| Sbjct 3009 TATCATCAGAAACGTAAAATTGAATTAAAGTATGACATGGTGGTA 3053 >seq128971 Length=1653 Score = 134 bits (148), Expect = 2e-26 Identities = 267/395 (68%), Gaps = 18/395 (5%) Strand=Plus/Minus Query 164722 TTACATGTTATTGTTTTTGATGAGATAGATGCTCTTTGCAAAAAACGTGGTGAT------ 164775 || ||| | || |||| ||||| || |||||| |||||||| ||||||| | Sbjct 727 TTGCATATAATAATTTTCGATGAAATCGATGCTATTTGCAAAGCACGTGGTTCTGTAGCC 668 Query 164776 ---AATATTA---TTCATGATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTA 164829 |||| | |||| ||| ||||||| ||||| ||| | | ||||| |||||||| Sbjct 667 GGCAATAGTGGTGTTCACGATACAGTGGTCAATCAATTGTTAGCCAAAATTGATGGTGTT 608 Query 164830 GAATCCTTAAATAATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGAT 164889 ||| || || || ||| | || | || ||||| ||| | | |||| | |||||||| Sbjct 607 GAACAATTGAACAACATTCTGGTTATTGGCATGACTAACAGGCGTGATATGATTGATGAA 548 Query 164890 GCTTTATTACGACCTGGTCGATTAGAATTGAAAATAGAAATAGGATTACCCGACAAAGAA 164949 |||||||| ||||||||||| ||||| || |||| ||||| | ||||| | ||||| Sbjct 547 GCTTTATTGCGACCTGGTCGCTTAGAGGTGCAAATGGAAATTAGTTTACCAAATGAAGAA 488 Query 164950 GGACGCCTTCAAATTTTAAAAGTTCATGTGGCTAAA---ATGAAATCCTGTGATATATTA 165006 || || | ||||| || || | || | ||| ||| | | ||| | Sbjct 487 GGGCGTGTACAAATATTGAATATCCA---CACCAAACGTATGCGCGAGTTTAATAAGATT 431 Query 165007 TCTCCCGATGTAGATTTAAATAAAATAGCTGCCGAAACTAAAAATTATAGTGGTGCTGAA 165066 | |||||||| ||| || | || || | || || |||| |||||| ||||| Sbjct 430 GCGCCCGATGTGGATAGCAAGGAGATTGCCACATTGACAAAGAATTTTAGTGGCGCTGAG 371 Query 165067 TTAGAGGGATTAGTAAGAGCCGCTCAATCAACCGC 165101 | ||||| |||||| | || || ||||| ||||| Sbjct 370 ATTGAGGGTTTAGTACGCGCAGCACAATCGACCGC 336 Score = 86.0 bits (94), Expect = 7e-12 Identities = 184/272 (68%), Gaps = 6/272 (2%) Strand=Plus/Minus Query 164395 TGGAATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCAGA 164454 ||| |||| | ||||||| | ||||| | ||| |||||| | |||||| || Sbjct 1183 TGGGATTTCGGCAAAATGGGTATCGGTGGTTTGGATAACGAATTTAATGCAATTTTCCGA 1124 Query 164455 CGAGCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCTGTAAACAT 164514 ||||| ||||| || | |||| ||| | | || || | || || ||||| Sbjct 1123 CGAGCTTTTGCATCGCGCGTCTTTCCACCAGAACTTGTCGAACAACTTGGTTGCAAACAC 1064 Query 164515 ATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGATGC 164574 | || || || | ||| |||| || |||||| |||||||| ||||||| ||| Sbjct 1063 GTTAAGGGTATACTGTTATATGGGCCACCTGGTACTGGTAAAACCCTAATGGCCCGACAA 1004 Query 164575 ATTGCTCAAGCTTTTAAAT---CGCGACCCGTTAAAATTGTTAATGGTCCTGAATTATTG 164631 || | | || | |||||| || || ||| || |||||||||||||| || | ||| Sbjct 1003 ATCGGT-AACATGTTAAATGCACGTGAACCG--AAGATTGTTAATGGTCCACAAATTTTG 947 Query 164632 AACAAATATGTAGGTGAGTCAGAAGCTAATGT 164663 | |||||||| || || || ||||| ||||| Sbjct 946 GATAAATATGTGGGCGAATCTGAAGCCAATGT 915 >seq128143 Length=5596 Score = 129 bits (142), Expect = 7e-25 Identities = 223/319 (70%), Gaps = 4/319 (1%) Strand=Plus/Plus Query 6922 GCATAAGAAGCTACATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACAT 6981 ||||| ||||| | ||| || || ||||| || |||||||| || | ||| || || Sbjct 1281 GCATAGGAAGCAATATTGAATGGCACACCCAAACCCATATCGGCGCTACGTTGGTATAAT 1340 Query 6982 TGACAAGATAAAATATTGTCTATAGCATAAAATTGACACAATACA-TGACATGGAGGTAA 7040 ||||| |||| | || | | ||||||| | | | ||| |||||||| ||||| Sbjct 1341 TGACATGATAGCTCACCGTTGGCAACGAAAAATTG-CGCCAGACAATGACATGGTGGTAA 1399 Query 7041 AACAGCCTGATCTATATCAGATGGATTCCAAGCAGTCATTAAAATACGTCTATCATTTGG 7100 | || ||||||| |||||||| |||| ||||| || |||| ||||||||| Sbjct 1400 TGCCATTTGTGGTATATCAACAGGATTCCATGCAGACATTATGATGCGTCGATCATTTGG 1459 Query 7101 ATTTGTTTTTAATTTTGTTA-TAATTATTTGTAATTGATCTATACCCTGACCTTCATAAT 7159 ||| || ||| | | | ||| | | || ||||||||| |||| ||||| || | Sbjct 1460 ATTA-TTACGGATTGTATCAATAACTTGTGTTAGTTGATCTATGCCCTCACCTTTGTAGT 1518 Query 7160 TAGTATGACAATTTATATAATTAGCTCCAAAATGTCTCCATTGAAACCCATAAATAGGAC 7219 || | ||| | ||| || | ||| ||||| | ||||||||| ||||||| |||| Sbjct 1519 TATCCTTGCAAGTGCGATATTTTGATCCGAAATGACGCCATTGAAAACCATAAACTGGAC 1578 Query 7220 CTAAATCACCTTCTTCACG 7238 ||||||| ||||| ||||| Sbjct 1579 CTAAATCGCCTTCCTCACG 1597 >seq32924 Length=7297 Score = 84.2 bits (92), Expect = 3e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 19355 ATACCTGAAATAGGTGATAAGTTTGCTTCTTTTACTGCTCAAAAAGGCACATGTGGTATG 19414 ||||| |||| ||||||||||||||||| | | ||||| || || |||||||| Sbjct 4628 ATACCACAAATTGGTGATAAGTTTGCTTCACGTCACGGACAAAAGGGTACTTGTGGTATC 4687 Query 19415 ATTTATCGTCAAGAAGATATGCCTTTTACTAAAGATGGTATAGTGCCGGATCTTATTATT 19474 |||||||||||||||||| | || || || || ||| ||| ||| ||||||| Sbjct 4688 CAATATCGTCAAGAAGATATGGCCTTCACATGCGAGGGATTAGCGCCAGATATTATTATC 4747 Query 19475 AACCCACATGCTTTTCCAAGTCGAATGAC 19503 || || || || ||||| || ||||| Sbjct 4748 AATCCTCACGCCATTCCATCACGTATGAC 4776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 594506745522000