Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_005905.1 Length=86462 Score E Sequences producing significant alignments: (Bits) Value seq169594 113 2e-20 >seq169594 Length=2476 Score = 113 bits (124), Expect = 2e-20 Identities = 189/271 (70%), Gaps = 2/271 (1%) Strand=Plus/Minus Query 3875 GGTGTACATTTTATGATGGCTGACGGTGGGTTCTCGGTTGAGGGTCAAGAAAATATGCAA 3934 ||||| |||||| | ||||| || || || || || || || |||||||||||||| || Sbjct 1627 GGTGTTCATTTTGTCATGGCAGATGGAGGATTTTCCGTCGAAGGTCAAGAAAATATCCAG 1568 Query 3935 GAAATGTTATCGAAAAAGATGTATTTGTGTCAATGTTTAATTGCATTGATGATCATACGA 3994 ||| | | || || | | || ||||||||||| | || ||||||| || | ||| Sbjct 1567 GAACTACTTTCTAAGCAACTATACTTGTGTCAATGCCTCATGGCATTGAAAATACTGCGA 1508 Query 3995 ATTGGTGGTCATTGTGTTATCAAATTTTTCGATATATTTACACCTTTTAGTGCTGGTTTA 4054 || ||| || | || |||||| || || ||||||| || ||||||| || | Sbjct 1507 GTTAATGGCAGTTTTCTTTGCAAATTGTTTGACTTATTTACTCCATTTAGTGTGGGGCTT 1448 Query 4055 GTGTATTTGATGTATAGATCTTTTAATCGTATTTGTATTTTCAAACCACATTCATCGC-G 4113 || ||| | |||||||||| ||| ||| || | | | || ||||| | | | || | Sbjct 1447 GTATATCTTATGTATAGATGCTTTGATCAAATATCTGTATTGAAACC-TAATAGTAGCAG 1389 Query 4114 ACCGGCCAATTCTGAAAGATATTTGGTGTGT 4144 ||| || || || ||||| || || || ||| Sbjct 1388 ACCTGCGAACTCAGAAAGGTACTTAGTATGT 1358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 275935804752385