Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq157162 102 7e-17 >seq157162 Length=2207 Score = 102 bits (112), Expect = 7e-17 Identities = 154/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA- 94851 ||||| ||||| || | || ||||||||||| | || || ||| |||| || | Sbjct 603 CGCAATACCAAATGAAGTGTTGATTCCTTTTGGATATTGTAGTCGG--ATAGAGTACGTC 546 Query 94852 -ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 ||| |||| ||||| ||| | || |||| | ||| |||||||| || |||||||||| Sbjct 545 CATCTTCCAATTGTTTGCCGGCGAAAATTAGACGTTGTTGATCTGGTGGGATACCTTCTT 486 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 | || | |||||| || ||||| | | ||||| | | ||||| || | |||| Sbjct 485 TATCCTGAATTTTAGCTTTGACATTTTCAATGGTGTCCGATGGCTCGACCTCCAAAGTGA 426 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| || ||||| || ||||| || || || ||||| Sbjct 425 TGGTCTTGCCAGTTAGTGTTTTAACGAAAATTTGCAT 389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447264080806200