Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq5608 122 1e-23 seq180343 105 1e-18 >seq5608 Length=1769 Score = 122 bits (134), Expect = 1e-23 Identities = 135/180 (75%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| || |||||||||| | | | || |||||||||||||| ||||| ||||| ||||| Sbjct 300 CGCCAAACGTCATCGCAAAGTTTTACGTGATAACATCCAAGGTATCACAAAGCCCGCTAT 359 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || ||| | |||||||||||||| || || ||| | || || ||| | |||||||| | Sbjct 360 TCGGCGTTTAGCTCGTCGTGGTGGTGTAAAACGTATATCAGGTTTGATATATGAAGAAAC 419 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| |||||||| | || | | | ||||||| |||||| || |||||| || Sbjct 420 CCGTGGCGTTTTGAAAGTATTTTTGGAAAATGTTATCCGTGATGCAGTCACCTATACTGA 479 >seq180343 Length=1018 Score = 105 bits (116), Expect = 1e-18 Identities = 94/118 (80%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 16582 CGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCAT 16641 ||| || | |||||| || ||| |||||||||||||| ||||| ||||| ||| | || Sbjct 454 CGTCATTCGTGATGCCGTCACCTACACCGAGCACGCTAAGCGTAAAACTGTTACCGCTAT 395 Query 16642 GGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | || |||||||||||||||||||| |||| | ||||||||||| ||||| Sbjct 394 GGACGTTGTATATGCATTGAAACGTCAAGGACGTACCCTATATGGTTTTGGCGGTTAA 337 Score = 87.8 bits (96), Expect = 3e-13 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || ||||||||||| || || |||||||| || || |||||| |||| || || || || Sbjct 659 CGTGATAACATCCAGGGTATAACCAAGCCGGCCATACGTCGTTTGGCACGCCGCGGAGGT 600 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAG 16567 ||||||||| | ||||| | | |||||||| | |||| ||| |||||| Sbjct 599 GTCAAGCGTATTTCTGGTCTCATTTATGAAGAAACGCGTGGTGTCTTGAAG 549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78907612098435