Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_006658.1 Length=30655 Score E Sequences producing significant alignments: (Bits) Value seq138882 109 1e-19 seq10170 86.0 1e-12 >seq138882 Length=1088 Score = 109 bits (120), Expect = 1e-19 Identities = 235/346 (68%), Gaps = 9/346 (3%) Strand=Plus/Plus Query 5308 TAAACTCTCGCCACATTTTCGTCTTAAGTGTTCTATTGAAACGTTC-ACATATGGATGCT 5366 |||| |||| |||||| || ||| | ||| |||||||| | ||| ||| || ||||| Sbjct 616 TAAATTCTCTCCACATCATCCCCTTTAATGTCCTATTGAATCTTTCTACA-ATAGATGCC 674 Query 5367 TTGAGATTGCTGAATGTTGAATACAGATTTATCTTGTGCTGCTTCATCAGATCTTTGAAT 5426 |||||| ||||||||| ||||| |||| || | | || | ||| | || ||| ||| Sbjct 675 TTGAGAACGCTGAATGTAGAATAGTGATTAATATGTTTGTGATCCATTAAATGTTTAAAT 734 Query 5427 TCTTTGTTGTAAAACTCTTTACCCTGATCAACATGGAGATTCTTAGGGA---TACGACCT 5483 | ||||| ||||||||||||| | ||| || | ||| || || | || || Sbjct 735 TTGCTGTTGAAAAACTCTTTACCATCATCTGTTTGCAAATTTTTTGGTACTCTATTAC-- 792 Query 5484 TGCTG--AAGTACAGACTTCATAGCACTTGTGACATCTACACCACTTTTAGACTTAATTG 5541 | ||| || || || |||||||| |||| | | | || | ||||| || | || Sbjct 793 TACTGTCAAATATAGTTCTCATAGCATTTGTAATACTTTCAGCTGTTTTATTTTTTACTG 852 Query 5542 GAACTGCCCAGGCATATTTTGAAAATATATCTATGATTGTAAGCAGATACTTGTATCCTT 5601 ||||||| | ||| ||||| ||||||| | ||| | || || ||| | Sbjct 853 CTCTACCCCAGGCTTTTTTGGAAAAGGTATCTATTACTGTTAAAAGGTAGCGATATTTCT 912 Query 5602 TATTGACTGTTGCATATGGAATCATCTCAACCAAGTCAGCTTGCCA 5647 |||| || || |||| ||||| |||||||| || |||||||| Sbjct 913 TATTATCTTTTTCATAATTTATCATTTCAACCAAATCCGCTTGCCA 958 >seq10170 Length=2836 Score = 86.0 bits (94), Expect = 1e-12 Identities = 124/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 7924 TGGTAAAGGTTTGTTCAACAATATAATCAACAAGCTCCCACTTGAACTTCACATACCAGG 7983 ||| |||||| | | || || ||||| || || || || ||||||||||| |||| || Sbjct 2072 TGGAAAAGGTATTCTTAATAAAATAATAAATAAACTTCCTGTTGAACTTCACTTACCTGG 2013 Query 7984 TTATCAGTACTGCGGTCCGGGTACAAAGTTAGCCAAGAGATTAGCTCGAGGTGATTCAGG 8043 ||||| | || ||||| || || || ||| | | ||||| | |||||| || Sbjct 2012 ATATCAATTTTGTGGTCCTGGCACTAAATTAAAACAACGCTTAGCAAGGGGTGATCAGGG 1953 Query 8044 TATAAATCCTTTGGACGCTGCGTGTAAGGAACACGATATAGCTTACTCAAAAAAT 8098 || |||||||||||| || ||||| ||||| ||||| | || | || |||| Sbjct 1952 GATTAATCCTTTGGACAAAGCTTGTAAAGAACATGATATTTCATATTTAAGAAAT 1898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97761146165430