Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_006949.1 Length=46900 Score E Sequences producing significant alignments: (Bits) Value seq183115 116 1e-21 >seq183115 Length=3769 Score = 116 bits (128), Expect = 1e-21 Identities = 186/267 (70%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 32977 CCATTTTCTTGTCCGCAATTTGCCTTCAAGATAAACCTCAGAGCCTTTTCGCAGATACTC 33036 |||||| | || ||| | |||||||| |||||||| ||||||||| || |||||||| Sbjct 2638 CCATTTACGAGTTTGCAGTGCGCCTTCAATATAAACCTGAGAGCCTTTGCGAAGATACTC 2579 Query 33037 GCTGGCAATTTCTGCCAGTTTCCCGCTCATCACCACACGGTGCCACTCCGTCTGCTCCTT 33096 | |||| ||| ||||| || || || || | |||||||||||| |||| ||| || Sbjct 2578 ACCAGCAACTTCAGCCAGCTTGCCAAACAAAACAATACGGTGCCACTCGGTCTTCTCTTT 2519 Query 33097 TTGCTCGCCAGTATTTTTATCTCGCCATTGTTCTGACGTAGCTATTGTCAGGTTAGCGAA 33156 || ||||| | || || ||||| |||||| ||||| | || | ||| || | Sbjct 2518 AGTTTCCCCAGTTTGCTTGTCACGCCAGCTTTCTGAAGTAGCCAGCGTGATGTTGGCAAC 2459 Query 33157 CGCTGTTCCTGATGGTGAGTATCTAACTTCCGGGTCTTGTCCAACCCGACAAAGGATAAT 33216 || || || ||| | ||||||||||||||| || | | || | ||| Sbjct 2458 AGCACCGCCATTCGGCATGTAGCGAACTTCCGGGTCTTGACCCAGATTTCCAACTAAAAT 2399 Query 33217 CACCTTATTTACGCCTCTGCTTGCCAT 33243 || || |||| |||||||||||||| Sbjct 2398 TACTTTGTTTATACCTCTGCTTGCCAT 2372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 149631996328980