Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq66438 181 1e-40 >seq66438 Length=2923 Score = 181 bits (200), Expect = 1e-40 Identities = 451/689 (65%), Gaps = 15/689 (2%) Strand=Plus/Plus Query 21310 ATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAATTTTAC 21369 ||| || |||||||| ||||| | |||||| | ||||||||| || ||||| || || Sbjct 909 ATCCGCCACAAATTCAATATAATCCGACATTAGCTTACAATTCATGCCAATCAAATTCAC 968 Query 21370 AGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTATATTTAT 21429 || | ||| | ||| || || || ||| || || || ||| |||| || | || Sbjct 969 TGGCAAAGCATCTGTTAAGAATTCTTGTTCAATTTTAACCGCCTCAGCAATGATTTCAAT 1028 Query 21430 TATCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACATGCAAAATCACA 21489 || | |||| || | | || |||| ||||||| ||| ||||||||||| Sbjct 1029 AATACGCTCCCTACTCGGCTTCTGTACCAAATGTTGGAACATCAGACAAGCAAAATCACA 1088 Query 21490 ATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCC 21549 ||| ||||||||||| | |||| ||||| || ||||| || |||||||||| || Sbjct 1089 ATGTAAACCTTCATCACGCGAGATTAGCTCATTGGAGAATGTCAAGCCGGGCATTAGACC 1148 Query 21550 TCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGC 21609 | ||||| |||||||| || || ||||| || |||||| ||||| |||||||| Sbjct 1149 ACGTTTTTTCAACCAAAAGATCGAAGCAAAACTACCGCTAAAGAATATGCCTTCAACGGC 1208 Query 21610 AGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCCATTTTTCTGC 21669 ||||||||||| | |||||||| | ||| |||| | |||||| | ||| Sbjct 1209 AGCAAATGCAATGACACGTTCACCAAAATTAGCCGCTTTTGATGAGATCCATGCTAGTGC 1268 Query 21670 CCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAAGATGAttttt 21729 ||| | ||||| |||| | || || |||||||| || || | | Sbjct 1269 CCAATCAGCCTTACGCTTAACGGCAGGGATCGTTTCAATAGCATTAAA--------TANT 1320 Query 21730 ttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCAGAATGTATATT 21789 ||| |||| | ||| ||||||||||| ||||| | ||| Sbjct 1321 TTC-----CATCCTTAATGTAGGTATCAATAAGAATGCTATACATTTCTGAATGCACATT 1375 Query 21790 TTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGAACCTC-GGAAT 21848 ||| || ||||| ||||| || ||||| || | ||| || | | ||| || || || | Sbjct 1376 TTCCATTGCTATTTGAAAGCCATAAAAGCAACGTGCTTCGGTAATTTGTACTTCTTGACT 1435 Query 21849 AAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAAAATGCCAATA 21908 ||| |||| | | | |||||||| || || ||||| |||||| || || || || | Sbjct 1436 GAAA-CGTTCAACTAGATTTTCATTAACAATACCATCGGAGGCGGCGAAGAAAGCTAAAA 1494 Query 21909 TATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTCCAATCTAATAAATCTTTTG 21968 | | || |||| ||||| || || || | | |||||| | ||||| | Sbjct 1495 CGTGTGATACGAAATGACGTTCATTGTCGGTAAGACGTACCCAATCGTCCATGTCTTTGG 1554 Query 21969 ATAAATCTACTTCTTCAGTTGTCCAAAAG 21997 | | ||| || ||||| ||||||||| Sbjct 1555 AGAGATCAACCTCTTCTACGGTCCAAAAG 1583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 530682115535800