Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq114852 488 7e-133 seq66438 221 2e-52 >seq114852 Length=3422 Score = 488 bits (540), Expect = 7e-133 Identities = 1236/1859 (66%), Gaps = 48/1859 (3%) Strand=Plus/Plus Query 62016 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 62075 || ||||| ||||||| ||| ||||| || ||||| || || |||| || |||| Sbjct 856 GCTGGTTTGGTACGTAAATAATACATGCCAGTTTTGAGCCCCGCTTTCCAACCAAAAAAG 915 Query 62076 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 62135 || ||| || |||||| ||| | || || |||| ||| ||||| | ||||| ||| Sbjct 916 TGTATAGATGTAAGTTTGCCATAGTTTGGTTCAGCTACATGAATATTAAACGATTGGCTT 975 Query 62136 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 62195 ||||| || || || || | || || ||||| || || | |||||| | || ||| Sbjct 976 TGATCAATAAATGCGCCACGATCGGCTGCCATCTTCATTGTAGTCTTTACCGATATCTCC 1035 Query 62196 CAAATAGTTTTATAAACT-CGCTTAATATCTTCTGGAAGGTTTGTATTC--TGAATGGAT 62252 || | ||| || |||| | | | || | | | | | | |||| || | || || || Sbjct 1036 CACACAGTCTTGTAAAGTTCACGTATTTTTTGCGGTATTGTTTCAATACCTTGTATTGAA 1095 Query 62253 CCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAA 62312 |||| | | ||||| || | || || ||||||| ||| || ||||| | | Sbjct 1096 CCACGACTGGTTATAATTTTAGTTTTCATTTCATCATCCCACAAACCCAATTCGGTAAGA 1155 Query 62313 ACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAA 62372 | | | | ||| ||||||| ||||||||||| || || | ||| | ||| | ||| Sbjct 1156 TCGCGTAACAAATGATGATTAACAACTTGAAATTCACCCGATAGTACGCGACGATTATAA 1215 Query 62373 ATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCA 62432 ||||| ||||| ||||| | || ||||| || |||| ||||||||||||||||||| Sbjct 1216 ATATTTGAAGTATAAGGTTCAAAAGATTCATTGTTGCCCATAATTTGAGCAGTTGATGCA 1275 Query 62433 GTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTA-TGTTCTGATTTTATCTTT 62491 || ||||| ||||||| | ||| || | | || | || | | ||||| ||||| Sbjct 1276 GTAGGCATGGGTGCCAAAAGTAAGGAGTTGCGTACGCCATGCTGCTTT-ATTTTCTCTTT 1334 Query 62492 ---TAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAG 62548 || || ||| | ||| ||||| | ||| ||| || Sbjct 1335 CAATACAGT---CCAGTCCCATAGATCGGTTGGTTTTTTATTCCACATATCATATTGGAG 1391 Query 62549 AATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAG 62608 ||||| || || | || ||| | ||||| || || | || | || ||||| | Sbjct 1392 TATACCTTTGCTAACAGGTGAGCCTTCGTATGTTTCATAAGTACCATATTTTTCAGCCAA 1451 Query 62609 TTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTA-GAT 62667 ||||||||| || || ||||| || || || || |||||||| || | | ||| | || Sbjct 1452 TTCACAACTAGCTTCCAATGCGCCATAGTACATTGTTTCGAAAATTTGTTGATTCAAGA- 1510 Query 62668 CTTGTGCTTCCAG---GCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATC 62724 |||| || | ||| || |||| ||| | || || || || || || || | Sbjct 1511 ---GTGCAGCCTGCTCGCTCTCGTATGGGTAACGCATAAGGATTAAAGCATCTGCAAAAC 1567 Query 62725 CTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAG 62784 |||| || ||||||||||| || | |||||| || || | | | ||| || | | Sbjct 1568 CTTGTACGCCAATACCGATGGGGCGATGTCTGAAGTTTGATTTCTTTGTTTCGGGCAATG 1627 Query 62785 GATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACT---TTGACCACAT 62841 |||||| ||| | || ||||||||||| ||||| | |||| ||| || | Sbjct 1628 GATAATGATTCACTTCGATAATTTTATTTAGATTACGCG---TTACGGTCTTGGTAACTT 1684 Query 62842 CCTTCA---GTTTGAGAAAATCAAATCGCCCATC---TATTACAAACATGTTCAAGGCAA 62895 | || | |||||| |||| || | || | | |||||||| || | |||| Sbjct 1685 CTTTTAAGCGTTTGA---AATCGTATGACTTTTCGGGTGTAACAAACATATTTAGCGCAA 1741 Query 62896 CAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGC 62955 ||||| | ||||||||| ||||| |||| | | | ||| | | || || |||| Sbjct 1742 TCGATGCTAAATTACAAACAGCTACTTCATCCGGTGCTGAATACTCAACAATTTCTGTGC 1801 Query 62956 AAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCAT 63015 | | ||||||||| || || || || | |||||||||||||||||| ||||| |||| Sbjct 1802 ATAAATTACTACATTTAATGGTGCCAACATTTTGTTGATTACTCTTCCGATTACATGCAT 1861 Query 63016 CCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA 63075 |||| || || ||| |||| || || || || | || ||||| ||||| || ||| | Sbjct 1862 CCTTGTACAGCATGTATGGTGTGCCGGTCTCTACTTGCGATTCAATAATAGCAAACCAAA 1921 Query 63076 CGACTC-GAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGT--GTATACA 63132 |||| | || || | | | || || | | | ||||| | ||| | ||||| | Sbjct 1922 -GACTTTGTGCTTTCACTGTC--TTATTAGCGCGTCCCTCTTGCTCATATTTAGTATATA 1978 Query 63133 ATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCA 63192 || |||||||||| || ||||| || | | || |||||||| | | || ||||||| Sbjct 1979 ATTGTTCGAACTCATCACCCCATACCTCATGCAGACCAGGACACTTGTGAGGGCACATCA 2038 Query 63193 ACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTA 63252 |||||| ||| | | | | | || ||||||||||| ||||| || ||||| | ||| Sbjct 2039 GCGACCAATCTTCATTAGCTTCAACACGTTTCATAAAAAGATCTGGTATCCATAAAGCAT 2098 Query 63253 TAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACG 63312 ||||| |||||| | | |||||| || || || || || || || | ||| | ||| Sbjct 2099 AAAATAAATCTCTAGCACGATGTTCTTCCTTGCCAGTGTTTTTCTTTAAATCCAAAAACT 2158 Query 63313 CCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTC 63372 | | | ||| | |||||| ||||| || || || || | | ||||| ||||| | Sbjct 2159 CAAATACATCTGCATGCCATGGTTCTAAATAGATTGCAAACGCGCCAGGACGTTTACCAC 2218 Query 63373 CTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGT 63432 | |||||||||| || | || ||||| | |||||||||||||| | | ||| | Sbjct 2219 CGCCCTGATCTACATAACGTGCCACATTATTGAATACTCTCAACATTGGTACCAAACCAT 2278 Query 63433 TTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTA-CTA-ATTGA 63490 | ||| | ||||| ||||||| || | || || || || ||| | || |||| Sbjct 2279 TCGATGTGCCATTTGTACCGGCAATTGCCGTGCCTCTAGCGCGTATACAATGTACATTG- 2337 Query 63491 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG-TGTCATAGA 63549 || || || || || || ||| || |||||||| ||| | | | | || | | | Sbjct 2338 -AGTCCAATACCACCAGCTGATTTGGAAATTAATGCACATTGATGTGCTGAAGTGA-ATA 2395 Query 63550 TACCCTCTATGCTATCATCGATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA 63608 | || || || ||| ||| || ||| ||| ||||| || || | ||| | | Sbjct 2396 TGCCATCAATCGAATCGGCGACCATTGTCAAG-AGAAAGCAAGATGATAGTTGTGGCTGC 2454 Query 63609 CTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGA 63668 || ||| | ||| || | || || ||||| |||||||| | ||| ||||||| | Sbjct 2455 CTTGTTGCGGCAGCGAACAGTGTTGGTGAAGCATGCGTAAAATAACGTTCTGAAAGTAAA 2514 Query 63669 TTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATT 63728 ||||| || || || |||| ||||||||| ||| || || | || ||||||||| Sbjct 2515 TTGTATGTTTCGATGGCTGCATCTATATCCTCGCCATGTATACCAATGGCAACACGCATT 2574 Query 63729 AACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCC 63788 ||||| ||||| || | ||||| || ||| |||| | | | ||||| || |||| Sbjct 2575 AACATATGCTGTGGACGCTCAACAATTTTGCCATTTAATCTGAGTAAGTAAGAACGTTCC 2634 Query 63789 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTT 63847 | ||||||||||||||||| || || |||||| || || || |||||| | || || Sbjct 2635 AGCGTTTTAAAACCAAAATAATTATAACCAAAGTCACGATCATATATAATAGCTGAATT 2693 >seq66438 Length=2923 Score = 221 bits (244), Expect = 2e-52 Identities = 477/709 (67%), Gaps = 20/709 (3%) Strand=Plus/Plus Query 33132 CAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 33191 ||| | |||||| || ||||| ||||| ||| | | ||||||||| || || | Sbjct 903 CAAGCGATCCGCCACAAATTCAATATAATCCGACATTAGCTTACAATTCATGCCAATCAA 962 Query 33192 TTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAAT 33251 || ||||| | ||| | || | |||||||||||||| ||||| || | || || Sbjct 963 ATTCACTGGCAAAGCATCTGTTAAGAATTCTTGTTCAATTTTAACCGCCTCAGCAATGAT 1022 Query 33252 AGATCTAA--CGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCG 33309 ||| || | || |||||| || | ||||||| ||||||| ||| || Sbjct 1023 TTCAATAATACGCTCCCT--ACTCGGCTTCTGTACCAAATGTTGGAACATCAGACAAGCA 1080 Query 33310 AAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGC 33369 ||||| || || | ||| || || | ||||| || ||||| || || | |||||| Sbjct 1081 AAATCACAATGTAAACCTTCATCACGCGAGATTAGCTCATTGGAGAATGTCAAGCCGGGC 1140 Query 33370 ATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCT 33429 ||||| ||||| ||||| | |||||| || ||||| || || |||||| || ||| Sbjct 1141 ATTAGACCACGTTTTTTCAACCAAAAGATCGAAGCAAAACTACCGCTAAAGAATATGCCT 1200 Query 33430 TCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAA-CCGGCGC-TGTCATG-TATCCAC 33486 || || |||||||| ||||| | | || ||| || | ||| | | ||| ||||| Sbjct 1201 TCAACGGCAGCAAATGCAATGACACGTTCACCAAAATTAGCCGCTTTTGATGAGATCCAT 1260 Query 33487 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 33546 | | |||||||| ||||| || || ||| |||||||| || ||||||| | Sbjct 1261 GCTAGTGCCCAATCAGCCTTACGCTTAACGGCAGGGATCGTTTCAATAGCATTAA----A 1316 Query 33547 TAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAA 33606 || ||| | ||| |||| || ||||| || | || ||||||||||| ||| Sbjct 1317 TANTTT---------CCATCCTTAATGTAGGTATCAATAAGAATGCTATACATTTCTGAA 1367 Query 33607 TGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACT 33666 || | ||||| || || || ||||| || || || || | || |||||||| |||||| Sbjct 1368 TGCACATTTTCCATTGCTATTTGAAAGCCATAAAAGCAACGTGCTTCGGTAATTTGTACT 1427 Query 33667 TCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAAC 33726 ||| || || ||||| | | ||||||||| || || || || ||| || || || Sbjct 1428 TCTTGACTGAAACGTTCAACTAGATTTTCATTAACAATACCATCGGAGGCGGCGAAGAAA 1487 Query 33727 GCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATA 33786 || || || ||| || |||| ||| | || || |||||| | || Sbjct 1488 GCTAAAACGTGTGATACGAAATGACGTTCATTGTCGGTAAGACGTACCCAATCGTCCATG 1547 Query 33787 TCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33835 ||||| || | ||| || ||||| || |||||||| ||||| || |||| Sbjct 1548 TCTTTGGAGAGATCAACCTCTTCTACGGTCCAAAAGGATGCTTCGGCCT 1596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621519911162200