Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_007052.1 Length=45861 Score E Sequences producing significant alignments: (Bits) Value seq182942 168 2e-37 >seq182942 Length=2376 Score = 168 bits (186), Expect = 2e-37 Identities = 475/720 (66%), Gaps = 47/720 (7%) Strand=Plus/Minus Query 26180 CATGACCATTGATGCACCAAATCTAATTGACTTAGCGATGTCGCCATGCGTTCTTATGCC 26239 ||| | ||| | |||||||| |||| ||||| || || |||| ||| || || Sbjct 2371 CATAATCATAGTGGCACCAAAAGCTATTGCTTTAGCAATATCACCATTACATCTAATACC 2312 Query 26240 ACCATCGGCAATCAAAGGTTTACGAGCTGCTTTA--CTACATATGTTTAATGCCGCTAAC 26297 |||||| ||||| || |||||| | | |||| | | |||| | | ||| || ||| Sbjct 2311 ACCATCTGCAATTAATGGTTTA-GTGGTGCTATTGGCAACATCT-TGTAAAGCATTTAAT 2254 Query 26298 TGCCAACCACCAGTACCAAAACCTGTTTTAATCTTTGTAATACAAACTCTACCAGGACCT 26357 || |||||||| |||||||| || ||||| | || ||||||||| || | || || || Sbjct 2253 TGTCAACCACCTGTACCAAATCCAGTTTTTAGTTTAGTAATACAAGCTTTTCCTGGGCCA 2194 Query 26358 ATACCGACTTTGGTAGCATCAGCACCAGCATTTTCTAATTCTCTAACACC---TTCTGGC 26414 | ||| | ||| | |||||||| || |||||||| ||| ||||| | || || | Sbjct 2193 ACACCAAATTTAATTGCATCAGCGCCTCATTTTTCTAAATCTTTAACAGCGGTTTTTGTC 2134 Query 26415 GTACCAACATTACCAGCAATAACAAAACTATCAGGTATATG-------------GGTTTT 26461 || || ||||||||||||| |||| | | |||| || ||||| Sbjct 2133 ATA---ACGTTACCAGCAATAATAAAAGGTTTA-GTATTTGTTTTAGCAAAAGTAGTTTT 2078 Query 26462 AATATGTTTAATCATGTTTATCACTGAATCTGAGTGACCATGCGCAATATCTATTGTAAT 26521 ||| ||||||||| | | || | || |||||||| |||||||| || ||||| Sbjct 2077 TATAAATTTAATCATTTCTTCCATAGCATTACTATGACCATGTGCAATATCAATAGTAAT 2018 Query 26522 ATATTCGGGGATTA-ATTTTTCTTGAGCTAACTTTTCAATAAAATCAAATTCCGCTTTCT 26580 | |||| || |||| ||| |||| ||| | ||||| || || ||| |||| | Sbjct 2017 AAATTCTGGAATTAGATTCAGTTTGA-TTAATTGTTCAAGTAACTCTTTATCCTCTTTTT 1959 Query 26581 TTACACCAACTGAAATAGATGCAAATAAGCCTGAATTTTGCATATGTTTTATAAAAGGTA 26640 | ||||||| ||| || ||| |||| | | |||||| ||| ||||| | Sbjct 1958 TAACACCAATGCTAATTGAAGCATATAACTTTTGTTCATGCATACTTTTAATAAA---TT 1902 Query 26641 TTCTTGCTTCTTCATCAAAACGATGCATGATATAAAAGTAATCATTTTCAGCAAACCATT 26700 | || || || |||||| ||||| | ||||||||||| ||||| ||| || || Sbjct 1901 TAATTTGATCGATATTAAAACGGTGCATTACATAAAAGTAATTATTTTTAGCCAATCAAA 1842 Query 26701 TCGCTAATTTCTCATTCATAACTGTTTGCATATTTGCAGGAACTACAGGTAGCTTGAATT 26760 | ||||| | || || || | ||||||||| |||| || | ||||| Sbjct 1841 TACATAATTCTTGGTTAATGACAGCACTCATATTTGCCGGAA-------TAATTGGAATT 1789 Query 26761 TT----TTCGGACCA---AATTGGATAGTTGTATCACATTCTGATCTACTCTCAACTATA 26813 || | |||| | || | | | |||||||||||| || | |||||| Sbjct 1788 TTAAAAGTAAAACCATTTAGTTTAACACTGGTATCACATTCTTTTCGTGATTTAACTATT 1729 Query 26814 CATTTATTAGGTATTAATTGAATATCTTCATAGTCAAAT---ATTTTCA-TTTTTATTTA 26869 | |||||| | |||| | ||||||||| | |||||| | |||| |||||||||| Sbjct 1728 CCTTTATTTGCAATTAGATTTATATCTTCAAAATCAAATTTCACATTCATTTTTTATTTA 1669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146314433182170