Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq114852 239 1e-57 seq128143 113 1e-19 seq66438 96.9 9e-15 seq183157 87.8 5e-12 >seq114852 Length=3422 Score = 239 bits (264), Expect = 1e-57 Identities = 1145/1798 (64%), Gaps = 54/1798 (3%) Strand=Plus/Minus Query 363387 TATTTTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAA-TGGTGATATTG 363445 |||||| || | ||| ||| |||| || ||| || ||| || || ||| | |||| Sbjct 2654 TATTTT-GGTTTTAAAACGCTGGAACGTTCTTACTTA-CTCAGATTAAATGGCAAAATTG 2597 Query 363446 TTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTG 363505 |||| || || ||||||||||||||||||||||| |||||||| ||| || |||| | | Sbjct 2596 TTGAGCGTCCACAGCATATGTTAATGCGTGTTGCCATTGGTATACATGGCGAGGATATAG 2537 Query 363506 ATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTATTCACGCACGCCACGCCAA 363565 |||| || || |||||||| || | || | ||| || ||||| || | |||| Sbjct 2536 ATGCAGCCATCGAAACATACAATTTACTTTCAGAACGTTATTTTACGCATGCTTCACCAA 2477 Query 363566 CAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGA 363625 || ||| | ||| | ||| | | ||||| | || ||||||||||| | | |||| Sbjct 2476 CACTGTTCGCTGCCGCAACAAGGCAGCCACAACTATCATCTTGCTTTCTCTTGACAATGG 2417 Query 363626 AGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT-----TGTGCTCTTATTTC 363680 | |||||| || || || || || ||||| || | ||||| | ||||| Sbjct 2416 TCGCCGATTCGATTGATGGCATATT-----CACTTCAGCACATCAATGTGCATTAATTTC 2362 Query 363681 CAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCAC-AGAA-CAGTTAC 363738 ||| || || || ||||| | | || ||| ||| || | ||| || Sbjct 2361 CAAATCAGCTGGTGGTATTGGACT--CAATGTACATTGTATACGCGCTAGAGGCACGGCA 2304 Query 363739 ATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAAT 363798 ||| ||| ||| || |||||||| |||| || ||| | | || || | ||| Sbjct 2303 ATTGCCGGTACAAATGGCACATCGAATGGTTTGGTACCAATGTTGAGAGTATTCAATAAT 2244 Query 363799 ACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTC 363858 || | || || || ||||| || || || || || |||||||| || ||| | Sbjct 2243 GTGGCACGTTATGTAGATCAGGGCGGTGGTAAACGTCCTGGCGCGTTTGCAATCTATTTA 2184 Query 363859 GAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAG 363918 || || ||||| ||| | ||||||||| | || | ||||||||| || || || Sbjct 2183 GAACCATGGCATGCAGATGTATTTGAGTTTTTGGATTTAAAGAAAAACACTGGCAAGGAA 2124 Query 363919 GAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGC 363978 ||| ||||| | ||| | || ||||| | ||| | | || | ||||||||| || Sbjct 2123 GAACATCGTGCTAGAGATTTATTTTATGCTTTATGGATACCAGATCTTTTTATGAAACGT 2064 Query 363979 GTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGAT 364038 || || || | | ||||||| || | ||||| ||| | ||||| ||||| || Sbjct 2063 GTTGAAGCTAATGAAGATTGGTCGCTGATGTGCCCTCACAAGTGTCCTGGTCTGCATGAG 2004 Query 364039 GTATGGGGTGACGACTATG--TTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTC 364096 ||||||||||| || | | | ||||| ||| ||||| |||||| ||| Sbjct 2003 GTATGGGGTGATGAGTTCGAACAATTATATACTAAA--TATGAGCAAGAGGGACGCGCTA 1946 Query 364097 GTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAG 364156 ||||||| | ||||| | || |||||||| || || || ||||| | ||||| | Sbjct 1945 ATAAGACAGTGAAAGCACAAAGTCTTTGGTTTGCTATTATTGAATCGCAAGTAGAGACCG 1886 Query 364157 GAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTG 364216 | ||||| || ||| ||||||| ||| | || || || ||| || || || | ||| Sbjct 1885 GCACACCATACATGCTGTACAAGGATGCATGTAATCGGAAGAGTAATCAACAAAATGTTG 1826 Query 364217 GTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGA 364276 | || ||| | || || |||| || || ||| |||| || | || || || || Sbjct 1825 GCACCATTAAATGTAGTAATTTATGCACAGAAATTGTTGAGTATTCAGCACCGGATGAAG 1766 Query 364277 CTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAA---GATGGTACTT 364333 || || ||||| | || ||||| ||||| |||||| | | || | | Sbjct 1765 TAGCTGTTTGTAATTTAGCATCGATTGCGCTAAATATGTTTGTTACACCCGAAAAGTCAT 1706 Query 364334 TTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGACAAGGTTA 364393 || | | | | | || || ||| | | || | ||||| | || ||| Sbjct 1705 ACGATTTCAAACGCTTAAAAGAAGTTACCAAGACCGTAACGCGTAATCTAAATAAAATTA 1646 Query 364394 TCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGCCCGA 364453 |||| |||| |||||||| | || ||| | || || || | | |||||||| | Sbjct 1645 TCGAAGTGAATCATTATCCATTGCCCGAAACAAAGAAATCAAACTTCAGACATCGCCCCA 1586 Query 364454 TTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTA---TGATGC----TCAAGATGGCA 364506 | ||| |||| ||||| || | || || | ||| | | |||| | | | | | Sbjct 1585 TCGGTATTGGCGTACAAGGTTTTGCAGATGCTTTAATCCTTATGCGTTACCCATACGAGA 1526 Query 364507 TTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCC 364566 || | ||| | ||| || ||| | | || || ||||||||||| | || | Sbjct 1525 -GCGAGCAGGCTG-CACTCTTG-----AATCAACAAATTTTCGAAACAATGTACTATGGC 1473 Query 364567 GCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGG 364626 ||| || ||| ||||| ||||| ||| | || | || || || || || Sbjct 1472 GCATTGGAAGCTAGTTGTGAATTGGCTGAAAAATATGGTACTTATGAAACATACGAAGGC 1413 Query 364627 TCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGA 364686 || ||| || | || | | |||| | |||| | |||||| | ||| | | | | Sbjct 1412 TCACCTGTTAGCAAAGGTATACTCCAATATGATATGTGGAATAAAAAACCAACCGATCTA 1353 Query 364687 TGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAACTCCCTCGTT 364746 ||| ||||| | | || | ||| ||||||| ||||||||| | || Sbjct 1352 TGGGACTGGACTGTATTGAAAGAGAAAATAAAGCAGCATGGCGTACGCAACTCCTTACTT 1293 Query 364747 ACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAA 364806 || |||||||| || || || ||||| || || | || ||||| || | || ||| Sbjct 1292 TTGGCACCCATGCCTACTGCATCAACTGCTCAAATTATGGGCAACAATGAATCTTTTGAA 1233 Query 364807 CCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAAT 364866 || | ||| ||| ||||| || || || || || || ||||||| || |||||| Sbjct 1232 CCTTATACTTCAAATATTTATAATCGTCGCGTACTATCGGGTGAATTTCAAGTTGTTAAT 1173 Query 364867 AAGTACCTAGTCAAG-GATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACT- 364924 | | | || | | |||||| |||| || |||||| ||| ||||| |||| Sbjct 1172 CA-TCATTTGTTACGCGATCTTACCGAATTGGGTTTGTGGGATGATGAAATGAA-AACTA 1115 Query 364925 ATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCC----AGAAGATCTG 364980 | || || || | |||||| | || ||| | | | || | || | || Sbjct 1114 AAATTATAACCAGTCGTGGTTCAATACAAGGTATTGAAACAATACCGCAAAAAATACGTG 1055 Query 364981 AAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCC 365040 || ||||||| || || ||||| || || | ||| || | ||||| ||| Sbjct 1054 AA----CTTTACAAGACTGTGTGGGAGATATCGGTAAAGACTACAATGAAGATGGCAGCC 999 Query 365041 GATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATG--ACTCAGCCAA 365098 ||||| || || ||||| ||| ||||| |||||||| |||||||| || | |||| Sbjct 998 GATCGTGGCGCATTTATTGATCAAAGCCAATCGTTTAA--TATTCATGTAGCTGAACCAA 941 Query 365099 CCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 || | ||| |||||||| || || || | || |||||| | || || || || || Sbjct 940 ACTATGGCAAACTTACATCTATACACTTTTTTGGTTGGAAAGCGGGGCTCAAAACTGG 883 >seq128143 Length=5596 Score = 113 bits (124), Expect = 1e-19 Identities = 315/478 (66%), Gaps = 4/478 (1%) Strand=Plus/Minus Query 111426 ATTTGGGATGGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTGTCGACAACGAA 111485 || ||||| |||||| | || || || |||||| | |||| |||| || || Sbjct 1651 ATATGGGACGGAAATAGTAGCCGGGAATTCCTAGATAAATGTGGTTTTGTGGAACGTGAG 1592 Query 111486 GAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAA 111545 ||||| ||| | || |||||||| || ||||||||||| || || || || | || Sbjct 1591 GAAGGCGATTTAGGTCCAGTTTATGGTTTTCAATGGCGTCATTTCGGATCAAAATATCGC 1532 Query 111546 ACCATGCACGACTCA-TATGATTCACAGGGAACTGATCAATTA-CAGAATGTCATTGATC 111603 || |||| | | | || | |||| | |||||| || || || || |||||| Sbjct 1531 ACT-TGCAAGGATAACTACAAAGGTGAGGGCATAGATCAACTAACACAA-GTTATTGATA 1474 Query 111604 AAATTAAGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCAT 111663 ||| || || |||| | ||| ||||| || ||| ||||||||| || || Sbjct 1473 CAATCCGTAATAATCCAAATGATCGACGCATCATAATGTCTGCATGGAATCCTGTTGATA 1414 Query 111664 TGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTACACGACGGGA 111723 | | |||||||| | |||||||||||| | || || |||| || | |||| Sbjct 1413 TACCACAAATGGCATTACCACCATGTCATTGTCTGGCGCAATTTTTCGTTGCCAACGGTG 1354 Query 111724 TGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATA 111783 ||| ||||| ||| | || || || || ||||| ||| | ||||| || || |||| Sbjct 1353 AGCTATCATGTCAATTATACCAACGTAGCGCCGATATGGGTTTGGGTGTGCCATTCAATA 1294 Query 111784 TTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACCGGGTG 111843 |||| || || || ||||||| | | || || ||| | ||| || || || | Sbjct 1293 TTGCTTCCTATGCTCTGCTTACTTACATGATTGCACATATAACAGGACTTCGGCCTGGAG 1234 Query 111844 AATTCATTCACGTTATCGGAGATGCGCATGTTTACACAAACCACATTGATGCACTTAA 111901 | || |||| | | || ||| ||||||| || | || |||||||| |||| || Sbjct 1233 ACTTTGTTCATACTTTGGGCGATACGCATGTCTATAAAAGTCACATTGAGCCACTGAA 1176 >seq66438 Length=2923 Score = 96.9 bits (106), Expect = 9e-15 Identities = 157/220 (71%), Gaps = 7/220 (3%) Strand=Plus/Minus Query 22433 TTAAGAATAAGGCAGATTGGGCGCTGAAATGGATG--AACAATGAACGTTCATTCGCG-G 22489 ||||| |||||| |||||||| || |||||| | ||| | | ||| | | Sbjct 1288 TTAAGCGTAAGGCTGATTGGGCACTAGCATGGATCTCATCAAAAGCGGCTAATTTTGGTG 1229 Query 22490 AACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTT-TCTGGAGCATTTTG-TGC 22547 ||||| | ||||||||||||| ||||||||||| |||||| | | || ||||| | | Sbjct 1228 AACGTGTCATTGCATTTGCTGCCGTTGAAGGCATATTCTTTAGCGGTAG--TTTTGCTTC 1171 Query 22548 AATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAAT 22607 ||||||||| | |||||||||| | ||||| || | || || || |||||| |||| Sbjct 1170 GATCTTTTGGTTGAAAAAACGTGGTCTAATGCCCGGCTTGACATTCTCCAATGAGCTAAT 1111 Query 22608 TAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATG 22647 || ||||| ||| | ||| |||||||| ||| || Sbjct 1110 CTCGCGTGATGAAGGTTTACATTGTGATTTTGCTTGTCTG 1071 >seq183157 Length=4427 Score = 87.8 bits (96), Expect = 5e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 111591 AATGTCATTGATCAAATTAAGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGG 111650 ||||| ||||| | | || || ||||||| ||| ||||| |||||||| ||| ||| Sbjct 3263 AATGTAATTGAAAAGCTAAAAAATAACCCAAATTCACGTCGTATTATTATCTCTGCGTGG 3322 Query 111651 AACCCAAATGCATTGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTAT 111710 ||| | ||| || ||||||||| || || |||||| | | | ||||||||| Sbjct 3323 AACGTTGGAGAATTAGATTTAATGGCACTGCCTCCTTGTCATGCTTTTTTTCAGTTTTAT 3382 Query 111711 GTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGT 111770 | || | ||||||||| || | || ||||| || ||||||| ||||| Sbjct 3383 GCCGCAGATAGTCGGCTTTCATGTCAGCTATACCAGCGTTCCTGTGATATTTTCCTTGGC 3442 Query 111771 GTTCCGTTTAATATTGCAAGTTA 111793 | || ||||||||||| ||||| Sbjct 3443 CTGCCATTTAATATTGCTAGTTA 3465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1300292716836690