Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq114852 141 9e-29 >seq114852 Length=3422 Score = 141 bits (156), Expect = 9e-29 Identities = 598/935 (64%), Gaps = 27/935 (3%) Strand=Plus/Plus Query 145055 TGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAG 145114 ||||| || || ||||| || || | | || ||||| ||| | || || || | Sbjct 1171 TGATTAACAACTTGAAATTCACCCGATAGTACGCGACGATTATAAATATTTGAAGTATAA 1230 Query 145115 GGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCC 145174 ||||||||||| || || ||||||| |||||||| || | ||| || |||||| ||| Sbjct 1231 GGTTCAAAAGATTCATTGTTGCCCATAATTTGAGCAGTTGATGCAGTAGGCATGGGTGCC 1290 Query 145175 ACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCC 145234 | | ||| || ||||| | ||| |||| ||| || | || || | | ||| ||| Sbjct 1291 AAAAGTAAGGAGTTGCGTACGCCATGCTGCTTTATTTTCTCTTTCAATACAGTCCAGTCC 1350 Query 145235 CATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGG 145294 ||||| || || | | |||||| || || || | || || | ||| | || Sbjct 1351 CATAGATCGGTTGGTTTTTTATTCCACATATCATATTGGAGTATACCTTTGCTAACAGGT 1410 Query 145295 CTGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGGCGAGCTCGCAACTCGCCTCCAGA 145354 ||||| | | ||| | || | ||| || | || ||||| || |||| Sbjct 1411 GAGCCTTCGTATGTTTCATAAGTACCATATTTTTCAGCCAATTCACAACTAGCTTCCAAT 1470 Query 145355 GCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCG 145414 ||||| | || ||||| ||| |||||| || | || || | ||||||||| Sbjct 1471 GCGCCATAGTACATTGTTTCGAAAATTTGTTGATTCAAGAGTGCAGCCTGCTCGCTCTCG 1530 Query 145415 TACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGC 145474 || || |||| || | |||||||| || | || |||| || | |||||||| Sbjct 1531 TATGGGTAACGCATAAGGATTAAAGCATCTGCAAAACCTTGTACGCCAATACCGATGGGG 1590 Query 145475 CGATGTTTCATGTTGCTCATCCTCGCCGACTCG---ATAGGATATCGATTACGGTCGATA 145531 |||||| | | ||| | || || | ||| | ||||| |||| |||||| Sbjct 1591 CGATGTCTGAAGTT--TGATT-TCTTTGTTTCGGGCAATGGATAATGATTCACTTCGATA 1647 Query 145532 ATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTC--AA 145589 |||||||| | || ||| ||| ||| |||| | ||||| | || || Sbjct 1648 ATTTTATTTAGATTACGCGTTACGGTCTTGGTAACTT-------CTTTTAAGCGTTTGAA 1700 Query 145590 ACCGA--GCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAAC 145647 | || | || || ||| | |||| | || ||||| || ||||||||||| Sbjct 1701 ATCGTATGACTTTTCGGGTGTAACAAACATATTTAGCGCAATCGATGCTAAATTACAAAC 1760 Query 145648 TGCCGTCTCCTCGGCGTCGCTG--TATTGTACGATCTCGGCGCACAAATTGCTACATTTG 145705 || || || || |||| || | || || || | ||| ||||| |||||||| Sbjct 1761 AGCTACTTCATC--CGGTGCTGAATACTCAACAATTTCTGTGCATAAATTACTACATTTA 1818 Query 145706 ATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTAC 145765 ||||| || | |||||| |||||||| |||| || || || |||||||| |||||||| Sbjct 1819 ATGGTGCCAACATTTTGTTGATTACTCTTCCGATTACATGCATCCTTGTACAGCATGTAT 1878 Query 145766 GGTCCGCCAGTCTCCACCTGCGTCTCCACGATA--AAACGGTGCAAGTC-CTGCGCACGC 145822 ||| ||| ||||| || |||| || | ||| |||| ||| | || || | Sbjct 1879 GGTGTGCCGGTCTCTACTTGCGATTCAATAATAGCAAAC---CAAAGACTTTGTGCTTTC 1935 Query 145823 ACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAA 145882 || || | ||| ||||||| || ||||| | || | | || ||| | | Sbjct 1936 ACTGTCTTATTAGCGCGTCCCTCTTGCTCATATTTAGTATATAATTGTTCGAACTCATCA 1995 Query 145883 CCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTG 145942 || | || ||| || |||||||||| || |||||||||||||| | | || Sbjct 1996 CCCCATACCTCATGCAGACCAGGACACTTGTGAGGGCACATCAGCGACCAATCTTCATTA 2055 Query 145943 GCGTTGACGCGCTCCATAAACAAATCTGGCACCCA 145977 || | || || | |||||| | |||||| | ||| Sbjct 2056 GCTTCAACACGTTTCATAAAAAGATCTGGTATCCA 2090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 470931330172800