Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq114852 506 3e-138 seq66438 224 1e-53 >seq114852 Length=3422 Score = 506 bits (560), Expect = 3e-138 Identities = 1236/1855 (67%), Gaps = 40/1855 (2%) Strand=Plus/Plus Query 61871 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 61930 || ||||| ||||||| ||| ||||| || ||||| || || |||| || |||| Sbjct 856 GCTGGTTTGGTACGTAAATAATACATGCCAGTTTTGAGCCCCGCTTTCCAACCAAAAAAG 915 Query 61931 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 61990 || ||| || |||||| ||| | || || |||| ||| ||||| | ||||| ||| Sbjct 916 TGTATAGATGTAAGTTTGCCATAGTTTGGTTCAGCTACATGAATATTAAACGATTGGCTT 975 Query 61991 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATTTCC 62050 ||||| || || || || | || || ||||| || || | |||||| | || ||| Sbjct 976 TGATCAATAAATGCGCCACGATCGGCTGCCATCTTCATTGTAGTCTTTACCGATATCTCC 1035 Query 62051 CAAATAGTTTTATAAACT-CGCTTAATATCTTCTGGAAGGTTTGTATTC--TGAATGGAT 62107 || | ||| || |||| | | | || | | | | | | |||| || | || || || Sbjct 1036 CACACAGTCTTGTAAAGTTCACGTATTTTTTGCGGTATTGTTTCAATACCTTGTATTGAA 1095 Query 62108 CCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAA 62167 |||| | | ||||| || | || || ||||||| ||| || ||||| | | Sbjct 1096 CCACGACTGGTTATAATTTTAGTTTTCATTTCATCATCCCACAAACCCAATTCGGTAAGA 1155 Query 62168 ACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAA 62227 | | | | ||| ||||||| ||||||||||| || || | ||| | ||| | ||| Sbjct 1156 TCGCGTAACAAATGATGATTAACAACTTGAAATTCACCCGATAGTACGCGACGATTATAA 1215 Query 62228 ATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCA 62287 ||||| ||||| ||||| | ||| ||||| || |||| ||||||||||||||||||| Sbjct 1216 ATATTTGAAGTATAAGGTTCAAAAGATTCATTGTTGCCCATAATTTGAGCAGTTGATGCA 1275 Query 62288 GTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTA-TGTTCTGATTTTATCTTT 62346 || ||||| ||||||| | ||| || | | || | || | | ||||| ||||| Sbjct 1276 GTAGGCATGGGTGCCAAAAGTAAGGAGTTGCGTACGCCATGCTGCTTT-ATTTTCTCTTT 1334 Query 62347 ---TAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAG 62403 || || ||| | ||| ||||| | ||| ||| || Sbjct 1335 CAATACAGT---CCAGTCCCATAGATCGGTTGGTTTTTTATTCCACATATCATATTGGAG 1391 Query 62404 AATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAG 62463 ||||| || || | || ||| | ||||| || || | || | || ||||| | Sbjct 1392 TATACCTTTGCTAACAGGTGAGCCTTCGTATGTTTCATAAGTACCATATTTTTCAGCCAA 1451 Query 62464 TTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATC 62523 ||||||||| || || ||||| || || || || |||||||| || | | ||| | | Sbjct 1452 TTCACAACTAGCTTCCAATGCGCCATAGTACATTGTTTCGAAAATTTGTTGATTCA-AGA 1510 Query 62524 TTGC-GCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTT 62582 ||| || | | ||| || |||| ||| | || || || || ||||| || |||| Sbjct 1511 GTGCAGCCTGCTCGCTCTCGTATGGGTAACGCATAAGGATTAAAGCATCTGCAAAACCTT 1570 Query 62583 GAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGAT 62642 | || ||||||||||| || | |||||| || || | | | ||| || | |||| Sbjct 1571 GTACGCCAATACCGATGGGGCGATGTCTGAAGTTTGATTTCTTTGTTTCGGGCAATGGAT 1630 Query 62643 AATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACT---TTGACCACATCCT 62699 ||| ||| | || ||||||||||| ||||| | |||| ||| || || | Sbjct 1631 AATGATTCACTTCGATAATTTTATTTAGATTACGCG---TTACGGTCTTGGTAACTTCTT 1687 Query 62700 TCA---GTTTGAGAAAATCAAATCGCCCATC---TATTACAAACATGTTCAATGCAACAG 62753 | | |||||| |||| || | || | | |||||||| || | |||| | Sbjct 1688 TTAAGCGTTTGA---AATCGTATGACTTTTCGGGTGTAACAAACATATTTAGCGCAATCG 1744 Query 62754 ATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAA 62813 |||| | ||||||||| ||||| |||| | | | ||| | | || || ||||| | Sbjct 1745 ATGCTAAATTACAAACAGCTACTTCATCCGGTGCTGAATACTCAACAATTTCTGTGCATA 1804 Query 62814 GATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCT 62873 ||||||||| || ||||| || | |||||||||||||||||| ||||| ||||||| Sbjct 1805 AATTACTACATTTAATGGTGCCAACATTTTGTTGATTACTCTTCCGATTACATGCATCCT 1864 Query 62874 TATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGA 62933 | || || ||| |||| || || || || | || ||||| ||||| || ||| | || Sbjct 1865 TGTACAGCATGTATGGTGTGCCGGTCTCTACTTGCGATTCAATAATAGCAAACCAAA-GA 1923 Query 62934 CTC-GAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGT--GTATACAATC 62990 || | || || | | | || || | | | ||||| | ||| | ||||| ||| Sbjct 1924 CTTTGTGCTTTCACTGTC--TTATTAGCGCGTCCCTCTTGCTCATATTTAGTATATAATT 1981 Query 62991 GTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACG 63050 |||||||||| || ||||| || | | ||| |||||||| | | || ||||||| || Sbjct 1982 GTTCGAACTCATCACCCCATACCTCATGCAGACCAGGACACTTGTGAGGGCACATCAGCG 2041 Query 63051 ACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAA 63110 |||| ||| | | | | | || ||||||||||| ||||| || ||||| | ||| || Sbjct 2042 ACCAATCTTCATTAGCTTCAACACGTTTCATAAAAAGATCTGGTATCCATAAAGCATAAA 2101 Query 63111 ATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 63170 ||| |||||| | | |||||| || || || || || || || | ||| | ||| | | Sbjct 2102 ATAAATCTCTAGCACGATGTTCTTCCTTGCCAGTGTTTTTCTTTAAATCCAAAAACTCAA 2161 Query 63171 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTC 63230 | ||| | |||||| ||||| || || || || | | ||||| ||||| || | Sbjct 2162 ATACATCTGCATGCCATGGTTCTAAATAGATTGCAAACGCGCCAGGACGTTTACCACCGC 2221 Query 63231 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGG 63290 ||||||||| || | || ||||| | |||||||||||||| | | |||||| | Sbjct 2222 CCTGATCTACATAACGTGCCACATTATTGAATACTCTCAACATTGGTACCAAACCATTCG 2281 Query 63291 ATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTA-CTA-ATTGATAG 63348 |||| ||||| || || | || | || || || || ||| | || |||| || Sbjct 2282 ATGTGCCATTTGTACCGGCAATTGCCGTGCCTCTAGCGCGTATACAATGTACATTG--AG 2339 Query 63349 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 63408 || || || || || ||| || |||||||| ||| | | | | | | ||||| Sbjct 2340 TCCAATACCACCAGCTGATTTGGAAATTAATGCACATTGATGTGCTGAAGTGAATATGCC 2399 Query 63409 CTCTATACTATCATCCATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAG 63467 || || ||| | | || ||| ||| ||||| || || | ||| | | || | Sbjct 2400 ATCAATCGAATCGGCGACCATTGTCAAG-AGAAAGCAAGATGATAGTTGTGGCTGCCTTG 2458 Query 63468 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGT 63527 || | ||| || | || || ||||| || ||||| | ||| ||||||| ||||| Sbjct 2459 TTGCGGCAGCGAACAGTGTTGGTGAAGCATGCGTAAAATAACGTTCTGAAAGTAAATTGT 2518 Query 63528 ACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACA 63587 | || || || |||| ||||||||| ||| || || | || ||||||||||||| Sbjct 2519 ATGTTTCGATGGCTGCATCTATATCCTCGCCATGTATACCAATGGCAACACGCATTAACA 2578 Query 63588 TGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAG 63647 | ||||| || | ||||| || ||| |||| | | | ||||| || ||||| | Sbjct 2579 TATGCTGTGGACGCTCAACAATTTTGCCATTTAATCTGAGTAAGTAAGAACGTTCCAGCG 2638 Query 63648 TTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTT 63702 |||||||||||||||| || || |||||| || || || |||||| | || || Sbjct 2639 TTTTAAAACCAAAATAATTATAACCAAAGTCACGATCATATATAATAGCTGAATT 2693 >seq66438 Length=2923 Score = 224 bits (248), Expect = 1e-53 Identities = 478/709 (67%), Gaps = 20/709 (3%) Strand=Plus/Plus Query 32489 CAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 32548 ||| | ||| || |||||||| ||||| ||| | | ||||||||| || || | Sbjct 903 CAAGCGATCCGCCACAAATTCAATATAATCCGACATTAGCTTACAATTCATGCCAATCAA 962 Query 32549 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 32608 || ||||| | ||| | || | |||||||||||||| ||||| || | || || Sbjct 963 ATTCACTGGCAAAGCATCTGTTAAGAATTCTTGTTCAATTTTAACCGCCTCAGCAATGAT 1022 Query 32609 AG--ATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCG 32666 || ||| | || |||||| | | ||||||| ||||||| ||| || Sbjct 1023 TTCAATAATACGCTCCCT--ACTCGGCTTCTGTACCAAATGTTGGAACATCAGACAAGCA 1080 Query 32667 AAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 32726 ||||| || |||| ||| || || | |||| || ||||| || || | |||||| Sbjct 1081 AAATCACAATGTAAACCTTCATCACGCGAGATTAGCTCATTGGAGAATGTCAAGCCGGGC 1140 Query 32727 ATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCT 32786 ||||| ||||| ||||| | |||||| || || ||||| || |||||| || ||| Sbjct 1141 ATTAGACCACGTTTTTTCAACCAAAAGATCGAAGCAAAACTACCGCTAAAGAATATGCCT 1200 Query 32787 TCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-GCTGTC-ATGT-ATCCAC 32843 || || || ||||| ||||| | | || ||| || || ||| | ||| ||||| Sbjct 1201 TCAACGGCAGCAAATGCAATGACACGTTCACCAAAATTAGCCGCTTTTGATGAGATCCAT 1260 Query 32844 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGA 32903 | | |||||||| ||||| || || ||| || || || ||||||||||| Sbjct 1261 GCTAGTGCCCAATCAGCCTTACGCTTAACGGCAGGGATCGTTTCAATAGCATTAAA---- 1316 Query 32904 TAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAA 32963 || ||| | ||| |||| || |||||||| | || ||||||||||| ||| Sbjct 1317 TANTTT---------CCATCCTTAATGTAGGTATCAATAAGAATGCTATACATTTCTGAA 1367 Query 32964 TGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACT 33023 || | ||||| || || |||||||| || || ||||| | || |||||||| |||||| Sbjct 1368 TGCACATTTTCCATTGCTATTTGAAAGCCATAAAAGCAACGTGCTTCGGTAATTTGTACT 1427 Query 33024 TCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAAC 33083 ||| || || ||||| ||| ||||||||| || || || || ||| || || || Sbjct 1428 TCTTGACTGAAACGTTCAACTAGATTTTCATTAACAATACCATCGGAGGCGGCGAAGAAA 1487 Query 33084 GCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATA 33143 || || || ||| || |||| ||| | || || |||||| | || Sbjct 1488 GCTAAAACGTGTGATACGAAATGACGTTCATTGTCGGTAAGACGTACCCAATCGTCCATG 1547 Query 33144 TCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33192 ||||| || | ||| || ||||| || |||||||| ||||| || |||| Sbjct 1548 TCTTTGGAGAGATCAACCTCTTCTACGGTCCAAAAGGATGCTTCGGCCT 1596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632180230282000