Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq66438 280 2e-70 seq78820 129 7e-25 >seq66438 Length=2923 Score = 280 bits (310), Expect = 2e-70 Identities = 504/730 (69%), Gaps = 25/730 (3%) Strand=Plus/Plus Query 92901 CACCGATCAACTCGTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAAT 92960 || || ||| |||| || || | ||| || |||||||| || || | ||||| | | Sbjct 884 CAACGTTCAGCTCGACCAGCAAGCGATCCGCCACAAATTCAATATAATCCGACATTAGCT 943 Query 92961 CACAATTCATTCCTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTA 93020 ||||||||| || | | | || || | ||| || || ||||| |||| || ||| Sbjct 944 TACAATTCATGCCAATCAAATTCACTGGCAAAGCATCTGTTAAGAATTCTTGTTCAATTT 1003 Query 93021 CAACGGCTTCTTTCAAGATTTCTAT--TACTCTAC-TATTTGGTGGTTTTTGTACGACAT 93077 ||| || || | |||||| || ||| || | || | || || ||||| | || Sbjct 1004 TAACCGCCTCAGCAATGATTTCAATAATACGCTCCCTACTCGGC---TTCTGTACCAAAT 1060 Query 93078 AATTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCAT 93137 | | |||| | || ||||| || |||||||||||| || || || || | ||||| Sbjct 1061 GTTGGAACATCAGACAAGCAAAATCACAATGTAAACCTTCATCACGCGAGATTAGCTCAT 1120 Query 93138 TGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAAC 93197 || |||||| || || || | || || ||||| || | |||||| || |||||||||| Sbjct 1121 TGGAGAATGTCAAGCCGGGCATTAGACCACGTTTTTTCAACCAAAAGATCGAAGCAAAAC 1180 Query 93198 TACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTG 93257 |||| ||| ||||| ||||| ||||| |||||||| | | |||||| ||||||| | Sbjct 1181 TACCGCTAAAGAATATGCCTTCAACGGCAGCAAATGCAATGACACGTTCACCAAAATTAG 1240 Query 93258 CGGAATTACTGCT--GATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAG 93315 | | || || | ||||||| || |||||||| || || ||||| ||| | Sbjct 1241 CCGCTTT--TGATGAGATCCATGCTAGTGCCCAATCAGCCTTACGCTTAACGGCAGGGAT 1298 Query 93316 TGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGAT 93375 ||||| ||||| ||||||| | ||| ||| ||||| ||||| || Sbjct 1299 CGTTTCAATAGCATTAAATANTT-----------TCC--ATCCTTAATGTAGGTATCAAT 1345 Query 93376 TAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACA 93435 | | ||||||||| ||||| ||||| |||||||| ||||| || || || || || Sbjct 1346 AAGAATGCTATACATTTCTGAATGCACATTTTCCATTGCTATTTGAAAGCCATAAAAGCA 1405 Query 93436 TCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTAT 93495 | ||||| || || || ||||||||| || | || || ||||||||||| || || Sbjct 1406 ACGTGCTTCGGTAATTTGTACTTCTTGACTGAAACGTTCAACTAGATTTTCATTAACAAT 1465 Query 93496 ACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTT 93555 ||||||||| || || || ||||| || | || || ||||| |||| || | Sbjct 1466 ACCATCGGAGGCGGCGAAGAAAGCTAAAACGTGTGATACGAAATGACGTTCATTGTCGGT 1525 Query 93556 AAG-CTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACG 93614 ||| | || |||||||| | ||||| || ||||| || ||||| || |||||||| | Sbjct 1526 AAGACGTA-CCCAATCGTCCATGTCTTTGGAGAGATCAACCTCTTCTACGGTCCAAAAGG 1584 Query 93615 ATGCTTCTGC 93624 ||||||| || Sbjct 1585 ATGCTTCGGC 1594 >seq78820 Length=1612 Score = 129 bits (142), Expect = 7e-25 Identities = 87/95 (92%), Gaps = 3/95 (3%) Strand=Plus/Minus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGA 126320 |||||||||||||||||| |||||||||||||||||||||| |||||||||| |||| Sbjct 729 ACAGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGA 670 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTA 126355 ||||||||||||||||||||||||||| | ||||| Sbjct 669 GCGTGGGTTCGAACCCCACACCTGACATA-TATTA 636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555584927495800