Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq114852 277 1e-69 seq157162 141 8e-29 >seq114852 Length=3422 Score = 277 bits (306), Expect = 1e-69 Identities = 747/1122 (67%), Gaps = 53/1122 (5%) Strand=Plus/Plus Query 128771 TTTGCGACTTGT--CCACGGTAAATTTAATAGCGTCCGCTGCCGGCTTGGTGCGCAAATA 128828 |||||||||| | | || ||||||| ||||| | || || || ||||| || ||||| Sbjct 816 TTTGCGACTTTTATCAACTGTAAATTGTATAGCATTTGCAGCTGGTTTGGTACGTAAATA 875 Query 128829 GTACATGCCTGTTTTCAAACCGCTTTTCCAAGTGTGCATGTGAATCGTGGTCAACAATGC 128888 |||||||| ||||| | || ||||||| | ||| || | || || ||| Sbjct 876 ATACATGCCAGTTTTGAGCCCCGCTTTCCAACCAAAAAAGTGTATAGATGT-AAGTTTGC 934 Query 128889 G-TAGGTGGGTTGACTCaaaaaaaTATTAAATGATTGACTTTGATCAATAAAGGGGCCGC 128947 ||| | |||| | | | ||||||||| ||||| |||||||||||||| | ||| | Sbjct 935 CATAGTTTGGTTCAGCTACATGAATATTAAACGATTGGCTTTGATCAATAAATGCGCCAC 994 Query 128948 GATCGGCAGCCATACCAATCAAATTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCT 129007 ||||||| ||||| || | | || || || |||||||| || |||||||| | Sbjct 995 GATCGGCTGCCATCTTCATTGTAGTCTTTACCGATATCTCCCACACAGTCTTGTAAAGTT 1054 Query 129008 CTCTCACGTGTTTT----GGTATTTCTTCAAT-----GTTCTGCACGCTGCCGTTGTTTG 129058 | |||| |||| |||||| |||||| || || || | | || || Sbjct 1055 C----ACGTATTTTTTGCGGTATTGTTTCAATACCTTGTATTGAACCACGAC--TGGTT- 1107 Query 129059 CAATAATTTTGTTTCGCATCTGTTCGTTGTACAAATTCAGTTTGATCAAATCGTCGGTCA 129118 |||||||| || ||| | || | ||||| || || | | | |||| || Sbjct 1108 --ATAATTTTAGTTTTCATTTCATCATCCCACAAACCCAATTCGGTAAGATCGCGTAACA 1165 Query 129119 AGTATTTGTTTATTACTTGAAAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGG 129178 | | | || | |||||||| ||||||| | ||||| ||| ||||| || | Sbjct 1166 AATGATGATTAACAACTTGAAATTCACCCGATAGTACGCGACGATTATAAATATTTGAAG 1225 Query 129179 TGAACGGCTCAAACGATTCATTGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCATGT 129238 | | || ||||| |||||||||||||| | |||||||| |||| || || |||||| Sbjct 1226 TATAAGGTTCAAAAGATTCATTGTTGCCCATAATTTGAGCAGTTGATGCAGTAGGCATGG 1285 Query 129239 AAGCCACGCAAAGC---GAGTTTCGCAAACCGTGCTGTTTAATGTCtttttttAATTGTG 129295 |||| |||| ||||| || | || ||||| || || | | ||| ||| | Sbjct 1286 GTGCCA---AAAGTAAGGAGTTGCGTACGCCATGCTGCTTTATTTTCTCTTTCAATACAG 1342 Query 129296 TCCAGTCCCACATCGAT--GTGGGTGTGTGATTCCACAAGTCGTATTGCAATATACC--- 129350 |||||||||| | ||| || ||| | | |||||||| || ||||| | |||||| Sbjct 1343 TCCAGTCCCATA--GATCGGTTGGTTTTTTATTCCACATATCATATTGGAGTATACCTTT 1400 Query 129351 -CAAACTGGCGGGACTGGAAAAGTAGGAATCGTGCACGCCGTAAGCTTTTGCCAATTCGC 129409 | ||| || | | || ||| | || | || || || |||||||| | Sbjct 1401 GCTAACAGGTGAGCCTTC----GTATGTTTCATAAGTACCATATTTTTCAGCCAATTCAC 1456 Query 129410 AACTCGCTTCCAATGCGCCAAAATAAATTGTTTCGGCAATTTTGGTG-TTCAACACTTTG 129468 |||| ||||||||||||||| | || ||||||||| ||||| | || ||||| | | Sbjct 1457 AACTAGCTTCCAATGCGCCATAGTACATTGTTTCGAAAATTT-GTTGATTCAAGAGTGCA 1515 Query 129469 GCCTGGTCGCTTTCGTACGGCATACGCAACATGGCAAATGTGTCGGCCAAACCTTGAATA 129528 ||||| ||||| ||||| || ||||| | | || | || || |||||||| | Sbjct 1516 GCCTGCTCGCTCTCGTATGGGTAACGCATAAGGATTAAAGCATCTGCAAAACCTTGTACG 1575 Query 129529 CCCACACCGATGGGTCGATGTTTTCTATTGGATTT--TTGTGCCGACAACAAGGGATAGT 129586 || | ||||||||| |||||| | || ||||| |||| || ||| ||||| | Sbjct 1576 CCAATACCGATGGGGCGATGTCTGAAGTTTGATTTCTTTGTTTCGGG--CAATGGATAAT 1633 Query 129587 AGTTGATGTCTATAATTTTGTTTAAATTCTTGACCACAATTTTCGTTACGTATTTTAACA 129646 || | || |||||||| |||| ||| || | || || || | |||||| Sbjct 1634 GATTCACTTCGATAATTTTATTTAGATTACGCGTTACGGTCTTGGTAACTTCTTTTAAGC 1693 Query 129647 TTTCAAAATTGTACTCGCCTACATCGATGTCGACAAATTGATTGACACAAATCGAGGCCA 129706 || |||| ||| | || | ||| ||||| ||| | |||||| || | Sbjct 1694 GTTTGAAATCGTAT--GACTTTTCGGGTGTA-ACAAACATATTTAGCGCAATCGATGCTA 1750 Query 129707 AATTGCAGACGGCACTTTCGTTTTTGTCACTG--TACTCGACAATTTCGGCGCACAAATT 129764 |||| || || || ||| | || ||| ||||| |||||||| | ||| ||||| Sbjct 1751 AATTACAAACAGCTACTTCATCCG-GTG-CTGAATACTCAACAATTTCTGTGCATAAATT 1808 Query 129765 ACTATTTTTAATGGTGCCCAAATGCTTTTGATTACTTTTCATGTTGCAAGCATCTTTGTA 129824 |||| |||||||||||| | || | ||||||||| ||| || || ||||| ||||| Sbjct 1809 ACTACATTTAATGGTGCCAACATTTTGTTGATTACTCTTCCGATTACATGCATCCTTGTA 1868 Query 129825 CATCATGTACGGCGTGCCCGTTTCGACTTGCGTTTCGACAAT 129866 || |||||| || ||||| || || ||||||| ||| | ||| Sbjct 1869 CAGCATGTATGGTGTGCCGGTCTCTACTTGCGATTCAATAAT 1910 >seq157162 Length=2207 Score = 141 bits (156), Expect = 8e-29 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| |||||||| |||| || || || ||||| | || || || | | Sbjct 389 ATGCAAATTTTCGTTAAAACACTAACTGGCAAGACCATCACTTTGGAGGTCGAGCCATCG 448 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || ||||| |||||||| || || || ||||| ||||| |||||| Sbjct 449 GACACCATTGAAAATGTCAAAGCTAAAATTCAGGATAAAGAAGGTATCCCACCAGATCAA 508 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || || ||||||||||| || || ||| || || | ||||| ||||| Sbjct 509 CAACGTCTAATTTTCGCCGGCAAACAATTGGAAGATGGACGTACTCTATCCGACTACAAT 568 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTTT 22449 || ||||| ||||| || | ||||| || ||||| | || || ||| || Sbjct 569 ATCCAAAAGGAATCAACACTTCATTTGGTATTGCGTCTACGTGGTGGTATT 619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418790366341675