Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq128143 111 1e-19 >seq128143 Length=5596 Score = 111 bits (122), Expect = 1e-19 Identities = 201/289 (70%), Gaps = 4/289 (1%) Strand=Plus/Plus Query 20171 AGTGGCTCTATATGCGTTTTGTAGATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCG 20230 |||||||| || || |||| |||| || | ||| ||||| || |||| ||| || || Sbjct 1179 AGTGGCTCAATGTGACTTTTATAGACATGCGTATCGCCCAAAGTATGAACAAAGTCTCCA 1238 Query 20231 GGTCTAAGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTA 20290 || | ||| || || | ||| |||| ||| ||||| | || | |||| ||||| || Sbjct 1239 GGCCGAAGTCCTGTTATATGTGCAATCATGTAAGTAAGCAGAGCATAGGAAGCAATATTG 1298 Query 20291 AAAGGAACTCCCAAACCCATGTC-TCCCGACCTCTGATACAGCTGACAGGAAAGCTCACC 20349 || || || ||||||||||| || | | || | || || | ||||| || |||||||| Sbjct 1299 AATGGCACACCCAAACCCATATCGGCGCTACGT-TGGTATAATTGACATGATAGCTCACC 1357 Query 20350 GTCAGCTACATAAAATTG-ACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGT 20408 || || || ||||||| | |||| ||||| || || | ||||| | | | Sbjct 1358 GTTGGCAACGAAAAATTGCGCCAGACAA-TGACATGGTGGTAATGCCATTTGTGGTATAT 1416 Query 20409 CCGCCGGGTTCCACGCACACATAATGATTCTTCTATCGTGCGGATTATT 20457 | | || ||||| ||| |||| ||||| | || ||| | |||||||| Sbjct 1417 CAACAGGATTCCATGCAGACATTATGATGCGTCGATCATTTGGATTATT 1465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 440361532157800