Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_009816.1 Length=70579 Score E Sequences producing significant alignments: (Bits) Value seq183188 89.7 2e-13 >seq183188 Length=4836 Score = 89.7 bits (98), Expect = 2e-13 Identities = 163/239 (68%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 60129 AACGTGACATCAGGAACGATAACTCCTAGGGAGAGAGTCTTAATACGGATCTTCTCGTCG 60188 || || | |||||||| | ||||||| || | | |||||||| || || || || Sbjct 3948 AAAGTAATATCAGGAATAACTACTCCTAAAGACATTGATTTAATACGAATTTTTTCATCT 3889 Query 60189 GCGTTTTCACGCTTGGTATCCAGGAACGCAAGGATGTCGGGGTGGTGTGCGTTCAAATAT 60248 || ||||||||||| | ||| | || | || || || || || | || ||||| Sbjct 3888 GCATTTTCACGCTTTGAATCTAAAAATAACATAATATCTGGATGATGAACATTTAAATAA 3829 Query 60249 ACCGCCCCTGCGCCCTGCCTTGCACCCAGTTGGTTAGAGTAGGAGAAGCTATCTTCTAGA 60308 || ||||| || || || ||| ||| ||||| |||| || || || |||||| ||| Sbjct 3828 ACTGCCCCAGCACCTTGTCTTTGACCTAGTTGATTAGCATATGAAAATGAATCTTCAAGA 3769 Query 60309 ATCTTCATCACAGGGATGACTCCAGAGGCCTGACCTTCTCGACCCTTAATCGGAGCTCC 60367 || ||||| || ||||| || || | || ||| || | ||||| |||||||| Sbjct 3768 ATTTTCATAACTGGGATAACGCCTGTTGCTTGATTTTTAATATTTTTAATTGGAGCTCC 3710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 225223744457300