Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq157162 149 1e-30 >seq157162 Length=2207 Score = 149 bits (164), Expect = 1e-30 Identities = 187/254 (74%), Gaps = 7/254 (3%) Strand=Plus/Minus Query 288229 ATGATGATTCATACATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTT 288288 |||||| |||| || ||||| || || | | ||| | ||||| || ||| ||| Sbjct 632 ATGATGGTTCAATAATA-CCACCACGTAGACGCAATACCAAATGAAGTGTTGATTCCTTT 574 Query 288289 TGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGA 288348 |||||||| ||||||| || || ||||| ||||| |||||||| || ||||| || ||| Sbjct 573 TGGATATTGTAGTCGGATAGAGTACGTCCATCTTCCAATTGTTTGCCGGCGAAAATTAGA 514 Query 288349 CGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATA 288408 || |||||| |||||| |||||||||||||| ||||| ||||| || ||||| || Sbjct 513 CGTTGTTGATCTGGTGGGATACCTTCTTTATCCTGAATTTTAGCTTTGACATTTTCAATG 454 Query 288409 GAATCGCTCGAT---TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAAT 288465 | || |||| || || || | ||||| ||||| || || || || || ||||| Sbjct 453 GTGTC---CGATGGCTCGACCTCCAAAGTGATGGTCTTGCCAGTTAGTGTTTTAACGAAA 397 Query 288466 ATCTGCATTATGTT 288479 || |||||| |||| Sbjct 396 ATTTGCATTGTGTT 383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1176884020349010