Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_009904.1 Length=142072 Score E Sequences producing significant alignments: (Bits) Value seq183188 113 4e-20 >seq183188 Length=4836 Score = 113 bits (124), Expect = 4e-20 Identities = 283/425 (67%), Gaps = 10/425 (2%) Strand=Plus/Minus Query 133033 TATCGGGAACAACTACTCCCAAAGAAAGTGTTTTGATTTGCTTTGCGGATTCTGCATTTT 133092 |||| |||| ||||||||| ||||| | || ||| || | || |||||||||| Sbjct 3941 TATCAGGAATAACTACTCCTAAAGACATTGATTTAATACGAATTTTTTCATCTGCATTTT 3882 Query 133093 CTTTTCTAGTTGA---TAAAAAGTCCATAATATCCGCATGGAAAACATTTAGATAGACTG 133149 | || |||| |||||| ||||||||| | ||| |||||||| ||| |||| Sbjct 3881 CACG-CT--TTGAATCTAAAAATAACATAATATCTGGATGATGAACATTTAAATAAACTG 3825 Query 133150 CGCCTGCACCTTGTCTTTGCCCTAATTGATTTGCGTACCGGAAACCATCTTCTAGCATTT 133209 | || |||||||||||||| |||| |||||| || || || |||||| || |||| Sbjct 3824 CCCCAGCACCTTGTCTTTGACCTAGTTGATTAGCATATGAAAATGAATCTTCAAGAATTT 3765 Query 133210 TCATAACAGGGACGACACCACTACCTGCCCCCTCAATTCCCTTAATAGGGTCACCAAGAG 133269 ||||||| |||| || || | || | ||| ||||| || | |||| Sbjct 3764 TCATAACTGGGATAACGCCTGTTGCTTGATTTTTAATATTTTTAATTGGAGCTCCAAATT 3705 Query 133270 CTCTTAAGTTTGAAAGATTTATGCCGACTCCTCCGCCAAGTTTAGATAGTTGAAGTGCAC 133329 ||||||| |||| | | | | ||||| || ||| |||| |||| || | || | Sbjct 3704 CTCTTAAATTTGTTAAACACAAAGCAACTCCACCACCACGTTTTGATAACTGTAATGAAG 3645 Query 133330 TGTTCAACGTTCTACCAATTGAAGACATTGAATCTTCTACTTGAATTAGAAAACAGCTGA 133389 | | | | | | ||||||| ||| |||||| | | | | ||| |||| ||| Sbjct 3644 TAGTAATAGCGCGAGCAATTGATTCCATGTTATCTTCAATTCGTAAAAGATAACA--TGA 3587 Query 133390 --CATACTCCCCTCTTCTAAGTCTACCTGCATTTAAAAAAGTAGGGGTTGCAGGTTGGTA 133447 || || |||||| | | |||||||||||||| || || || || ||||| | Sbjct 3586 AGTGTATTCACCTCTTTGTTTTTTTCCTGCATTTAAAAATGTGGGAGTAGCTGGTTGAAA 3527 Query 133448 TCTAC 133452 ||||| Sbjct 3526 TCTAC 3522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 453461049782400