Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_010106.1 Length=52975 Score E Sequences producing significant alignments: (Bits) Value seq183044 448 2e-121 >seq183044 Length=3031 Score = 448 bits (496), Expect = 2e-121 Identities = 764/1097 (70%), Gaps = 22/1097 (2%) Strand=Plus/Minus Query 51862 TTACACTACCTTTTCACAAACCAAGAATAACCAATTACTAGAGCCAATGTTCTTTGGTCA 51921 ||| || || ||||| |||| || ||| | || | | || || ||||| || ||||| Sbjct 2160 TTATACCACATTTTCGCAAAATAAAAATGATCAGCTGATGGAACCTATGTTTTTCGGTCA 2101 Query 51922 GAACGTTAACGTTGCTCGATATGACCAACAGAAGTACGGCATATTCGAGAAGTTAATTGA 51981 | |||||| |||| || | ||||||||| || || ||||| || || || ||||||| Sbjct 2100 GCCGGTTAACATTGCACGCTTTGACCAACAAAAATATGGCATTTTTGAAAAACTAATTGA 2041 Query 51982 GAAACAATTGTCATTCTTCTGGCGACCGGAAGAGGTAGACGTTTCCCAGGACCGTATTGA 52041 |||||| | || || |||||||| || ||||| || || || || | || || || || Sbjct 2040 AAAACAACTTTCTTTTTTCTGGCGCCCAGAAGAAGTTGATGTATCACGTGATCGCATCGA 1981 Query 52042 TTATCAGAAGC--TACCTGCAAACGAACAACACATTTTCACCAGTAATCTTCGTTATCAG 52099 |||||| ||| | || | | ||| |||||||||||| ||||||| | ||||| Sbjct 1980 TTATCA--AGCCTTGGCTAAACATGAAAAACACATTTTCATCAGTAATTTGAAATATCAA 1923 Query 52100 ATTCTTCTTGACTCAATTCAGGGACGTGGGCCCAACACAGTTTTGCTTCCAATCGTGAGC 52159 | ||| | || || || || |||||| | || ||| || ||||| ||| | | Sbjct 1922 ACTCTGTTGGATTCTATCCAAGGACGTAGTCCAAACGTAGCATTGCTACCATTGATCTCT 1863 Query 52160 ATTCCTGAATTGGAGACGTGGATTGAAACCTGGTCTTTCTCCGAGACTATTCATTCACGT 52219 ||||||||| |||| || ||| | ||||||||| | ||||| || || || ||||| || Sbjct 1862 ATTCCTGAACTGGAAACTTGGGTGGAAACCTGGGCATTCTCTGAAACCATCCATTCCCGA 1803 Query 52220 TCTTATACCCACATCATTCGTAATATTGTTACAGACCCAAGCATTATCTTT-GATGAAAT 52278 |||||||| || || || |||||||| |||| |||||| ||| || ||| ||||| || Sbjct 1802 TCTTATACGCATATTATACGTAATATCGTTAATGACCCA-GCACTAGTTTTCGATGATAT 1744 Query 52279 CGTAACTAACGAACACATCAAGGCACGAGCAATTGGCATCTCCCAATATTATGACGAACT 52338 | ||||||||||| ||| | || || | | ||||| || |||||||| || Sbjct 1743 TATCACTAACGAACAAATCCTTTCGCGTGCCAAAGATATCTCTGGTTACTATGACGATCT 1684 Query 52339 CCAGCAACTCACTGCATTATGGCAGTTGTTCGGAGAAGG-GAGC-CATGCTGGTCATGAA 52396 || | || | ||| | |||| |||||||| | || || ||| | || Sbjct 1683 AATCGAAATGACCAGCTACTGGTATCTGTTAGGAGAAGGTGTGCACAAAGTGGACGGTAA 1624 Query 52397 A----------TTAGTCTGCGTGAGTTGAAGAAGAAGCTGTATTTATGCCTCATGTCTAT 52446 | ||| |||| | | | || ||| |||| ||| ||||||||||| | | Sbjct 1623 AACTATTACCGTTAACTTGCGGGCGCTAAAAAAGCAGCTTTATATATGCCTCATGAGTGT 1564 Query 52447 CAATGCATTGGAAGCAATTCGCTTCTATGTCAGCTTTGCTTGCTCATTTGCCTTCGCAGA 52506 |||||| || |||||||| || || || || || ||||| || || || || |||||||| Sbjct 1563 CAATGCGTTAGAAGCAATACGTTTTTACGTGAGTTTTGCCTGTTCTTTCGCTTTCGCAGA 1504 Query 52507 ACGTAAGTTAATGGAAGGAAATGCCAAGATTATTC-GCTTAATTGCACGAGATGAAGCAC 52565 || | || |||||||| ||||| || || ||| ||||| |||| || || ||||| Sbjct 1503 GCGCGAATTGATGGAAGGTAATGCTAAAATCATTAAGCTTA-TTGCTCGTGACGAAGCGT 1445 Query 52566 TTCATTTGACAGGAACTCAGCACATGCTGAACCTTCTTGCA-AGTGGAAAAGATGACCCA 52624 | || ||||| ||||||||||| || || || ||| || | || || ||||||| | | Sbjct 1444 TACACTTGACCGGAACTCAGCATAT-CTTAAACTTGTTACGTAGCGGTGAAGATGATCTA 1386 Query 52625 GAAATGGGTGAAATTGCTGCTGAATGCCGCCAAGAATGCCAGAAATTGTTCGAAGATGCT 52684 ||||||| ||||||||| |||||||||||||| || | || | || | || Sbjct 1385 GAAATGGCTGAAATTGCCAAAGAATGCCGCCAAGAGTGTTACAATCTCTTTGTTTTGGCA 1326 Query 52685 GCTCAACAAGAGAAGGATTGGGCCGATTATTTGTTCAAAGATGGCTCTATGATTGGCTTA 52744 || || || || || || ||||| || |||||||| | | || || |||||||| | Sbjct 1325 GCGCAGCAGGAAAAAGAGTGGGCTGAATATTTGTTTAGCGGCGGTTCCATGATTGGTCTG 1266 Query 52745 AACAAGCAAATTCTATGCGGATATGTGGAATATATCACGAATATTCGTATGCAAGCAGTT 52804 |||||| | ||| | || || | || |||||||| ||||| || ||| | || ||| Sbjct 1265 AACAAGGATATTTTGTGGCAGTACATTGAGTATATCACTAATATCCGCATGAATGCGGTT 1206 Query 52805 GGATTAGATGCTCCATTCAAAGGTGCAACTAACCCGATTCCGTGGATTAATGCATGGTTG 52864 | | ||| || ||||| | | |||||||| || ||||| ||| | ||| || Sbjct 1205 GATCTTGATCTGCCCTTCAAGACCAGATCAAACCCGATCCCTTGGATCAATTCTTGGCTG 1146 Query 52865 AATTCGGATGCTGTACAGGTTGCTCCACAGGAAACGGAGATTAGTTCCTACCTGGTCGGG 52924 || ||| || || ||||| ||||||||| || |||| ||||| || |||||| Sbjct 1145 GTGTCTGATAACGTGCAAGTTGCACCACAGGAAGTTGAAGTTAGCTCCTATCTAGTCGGG 1086 Query 52925 CAAATTGACTCCGAAGT 52941 || ||||| || ||||| Sbjct 1085 CAGATTGATTCTGAAGT 1069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 169029682678230