Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq114852 100 3e-16 seq96136 87.8 2e-12 seq182963 84.2 3e-11 >seq114852 Length=3422 Score = 100 bits (110), Expect = 3e-16 Identities = 599/946 (63%), Gaps = 29/946 (3%) Strand=Plus/Plus Query 113896 ATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGT 113955 ||| | ||| ||||| ||| ||||||| || ||| | ||| ||||| | || Sbjct 1167 ATGATGATTAACAACTTGAAATTCACCCGATAGTACGCGACGATTATAAATATTTGAAGT 1226 Query 113956 GTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGG 114015 || || ||||| | |||||||| |||| ||||| || || || || || |||||||| Sbjct 1227 ATAAGGTTCAAAAGATTCATTGTTGCCCATAATTTGAGCAGTTGATGCAGTAGGCATGGG 1286 Query 114016 TGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCGTCCCA 114075 ||||| || | | ||| || | || | | | | || || || | | ||| Sbjct 1287 TGCCAAAAGTAAGGAGTTGCGTACGCCATGCTGCTTTATTTTCTCTTTCAATACAGTCCA 1346 Query 114076 GTCGTAGTTGAGCT-TTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGAGG 114134 ||| | | || | ||| | | |||||||||| | ||||| ||||||| | Sbjct 1347 GTCCCA-TAGATCGGTTGGTTTTTTATTCCACATATCATATTGGAGTATACCTTTGCTAA 1405 Query 114135 CTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCT 114194 | || || || || |||| || || | || | || |||||||| | || || | Sbjct 1406 CAGGTGAGCCTTCGTATGTTTCATAAGTACCATATTTTTCAGCCAATTCACAACTAGCTT 1465 Query 114195 CGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCAT---TGCCTTGGCCTCGT 114251 | | || | | |||||||| || ||||| | ||||| ||| |||| | Sbjct 1466 CCAATGCGCCATAGTACATTGTTTCGAAAATTTGTTGATTCAAGAGTGCA---GCCTGCT 1522 Query 114252 CGGAATCAAACGCGAGTCGGCACAAA-ATAAATACATCCGCGAGACCTTGGACACCGAGG 114310 || || | | | || || || || || |||| || | |||||| || || | Sbjct 1523 CGCTCTCGTATGGGTAACG-CATAAGGATTAAAGCATCTGCAAAACCTTGTACGCCAATA 1581 Query 114311 CCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTC---CACGGGATAAAAATTC 114367 || || ||||||||||| | || || |||| || || || |||||| |||| Sbjct 1582 CCGATGGGGCGATGTCTGAAGTTTGA-TTTCTTT--GTTTCGGGCAATGGATAATGATTC 1638 Query 114368 CTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATG-AAGCTTTTC 114426 ||||||| |||||||||| || || ||| || | ||| | |||| ||| Sbjct 1639 ACTTCGATAATTTTATTTAGATTACGCGTTACGGTCTTGGTAACTTCTTTTAAGCGTTT- 1697 Query 114427 GTAATCAAA--ACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGA 114484 | |||| | ||| | || | ||| || || || || || || || | | Sbjct 1698 GAAATCGTATGACT-----TTTCGGGTGTAACAAACATATTTAGCGCAATCGATGCTAAA 1752 Query 114485 TTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAA 114544 ||||| |||| |||||| | | ||||| | |||||| || || ||||| | Sbjct 1753 TTACAAACAGCTACTTCATCCGGTGCTGAATACTCAACAATTTCTGTGCATAAATTACTA 1812 Query 114545 CTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGC 114604 | ||||||||||| | || | |||||| ||| ||||| ||||||||||| ||| Sbjct 1813 CATTTAATGGTGCCAACATTTTGTTGATTACTCTTCCGATTACATGCATCCTTGTACAGC 1872 Query 114605 ATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCC--AGACATCGGCGG 114662 |||||||| || || ||||| ||| || | | |||||| || |||| | | | Sbjct 1873 ATGTATGGTGTGCCGGTCTCTACTTGCGATTCAATAATAGCAAACCAAAGACTTTG--TG 1930 Query 114663 CTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACT 114722 || ||| || || || || ||||| | ||| || || || || | ||| |||| Sbjct 1931 CTTTCACTGTCTTATTAGCGCGTCCCTCTTGCTCATATTTAGTATATAATTGTTCGAACT 1990 Query 114723 CTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGAC 114782 | |||||| |||| || || || ||| | ||||| | || ||||| | Sbjct 1991 CATCACCCCATACCTCATGCAGACCAGGACACTTGTGAGGGCACATCAGCGACCAATCTT 2050 Query 114783 CACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGC 114828 || | |||||||| ||||| || || ||||| ||||| | ||| Sbjct 2051 CATTAGCTTCAACACGTTTCATAAAAAGATCTGGTATCCATAAAGC 2096 >seq96136 Length=5821 Score = 87.8 bits (96), Expect = 2e-12 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 171907 ATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACACGGTTCAAGGAGATTGATATT 171966 ||| || ||||| |||||||| || |||||||||| ||||| || | ||||||||| Sbjct 5316 ATCCTTTCCACCTTGCAGACGCGTACCGAATTGACCACGTGGTTCTAGTAAATTGATATT 5257 Query 171967 GTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGTATCCGCGAGGGAGACTTCACC 172026 ||||||||| | || | | || || || ||||| ||| || || | |||||| Sbjct 5256 GTTTGAACCAACATAATTTTGCGCTAAATTAACAATTGTAGATTGTAGTGACATTTCACC 5197 Query 172027 GTGATGGTAGGCCGACTTGTCCGCGACATACGCCGCCAACTGTGCCACCTT 172077 |||||| ||||| ||| | || || || | | | || |||||||| || Sbjct 5196 GTGATGATAGGCAGACATTTCAGCCACTGAACCGGATAATTGTGCCACTTT 5146 >seq182963 Length=2454 Score = 84.2 bits (92), Expect = 3e-11 Identities = 198/294 (67%), Gaps = 14/294 (5%) Strand=Plus/Plus Query 10786 ACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGC 10845 ||| || |||||||| || || | || || ||| || | ||| ||||| ||||| Sbjct 2023 ACGGTCGAAGCGACCCGGACGCAATAGCGCCGGGTCCAGAACATCCGGACGGTTAGTCGC 2082 Query 10846 CGCGATGACAACGATGCCCGTCTCGTTA---TCAAAGCCATCCATCTCAGTCAAGAGTTG 10902 || || |||| |||||| || ||| ||||| || ||||| ||| || | ||| Sbjct 2083 TGCAATAACAATGATGCCT---TCATTACCTTCAAAACCGTCCATATCAACTAACATTTG 2139 Query 10903 ATTGATGGTTTGTTCGCGTTCATCATT--CGCGGGCATACCACCCGCACTGCGTTGCTTA 10960 || | || || || || ||||||| | | | | | ||| |||| ||||| | Sbjct 2140 GTTCAGTGTCTGCTCACGCTCATCATGACCACCGCCCAA--ACCTGCACCCCGTTGACGA 2197 Query 10961 CCGACGGCGTCAATTTCATCGATGAAAACGATACACGGT--TGATTTTCACGGGCAACTT 11018 || || || || |||||||| || |||| ||| || || || |||| | | || Sbjct 2198 CCTACAGCATCGATTTCATCAATAAAAATGATGCATGGGGCTGCTTTTTTTG--CCTGTT 2255 Query 11019 CAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAAT 11072 |||| ||||| || || | ||||| ||||| ||||||||||| ||||||| Sbjct 2256 CAAACATATCACGTACGCGAGATGCACCCACACCAACAAACATTTCGACAAAAT 2309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595984950898600