Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq114852 143 3e-29 seq157162 89.7 5e-13 >seq114852 Length=3422 Score = 143 bits (158), Expect = 3e-29 Identities = 325/486 (67%), Gaps = 7/486 (1%) Strand=Plus/Plus Query 154632 ACAATTTCTGCGCACAAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTG 154691 |||||||||| ||| |||||||| ||| ||||||||| | |||| ||||| || Sbjct 1789 ACAATTTCTGTGCATAAATTACTACATTTAATGGTGCCAACATTTTGTTGATTACTCTTC 1848 Query 154692 ATGTTGCATGCGTCTTTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGGTTTCAATA 154751 || ||||| || ||||||| ||||| || ||||| || || ||||| | ||||||| Sbjct 1849 CGATTACATGCATCCTTGTACAGCATGTATGGTGTGCCGGTCTCTACTTGCGATTCAATA 1908 Query 154752 ATTGTGCGAAACA--GACTTCGCGCCTCAACTTGACAAGTAAATCGATTTTCGCTCTCAT 154809 || | | || || ||||| | || | ||| | || || || ||||| Sbjct 1909 ATAG--CAAACCAAAGACTTTGTGCTTTCACTGTCTTATTAGCGCGTCCCTCTTGCTCAT 1966 Query 154810 ATTGTTCGTACAGTTTTTCAAACTCTAAACTGTACACGTCCGACAAACCGGGACAGCGGT 154869 ||| || | || ||| ||||| || | || || || ||| ||||| || Sbjct 1967 ATTTAGTATATAATTGTTCGAACTCATCACCCCATACCTCATGCAGACCAGGACACTTGT 2026 Query 154870 CGGGACACATCAATGACCACATTTCGTTTTGTTGTACGCGTTTCATAAACAAATCCGGCA 154929 || ||||||| ||||| ||| || || || ||||||||||| | ||| || | Sbjct 2027 GAGGGCACATCAGCGACCAATCTTCATTAGCTTCAACACGTTTCATAAAAAGATCTGGTA 2086 Query 154930 CCCACAAAGCGTACAACAAATCACGCGCCTTTTTGTCTTCAGCGCCCATGTTTCGCTTTA 154989 ||| ||||| || || ||||| | || | ||||| ||| ||||| ||||| Sbjct 2087 TCCATAAAGCATAAAATAAATCTCTAGCACGATGTTCTTCCTTGCCAGTGTTTTTCTTTA 2146 Query 154990 AATTCAAAAAATCATATATGTCGGCGTGCCACGGCTCTAAATATACGGCCATCGCGCCTT 155049 ||| |||||| ||| ||| || || ||||| || |||||||| | || | |||||| Sbjct 2147 AATCCAAAAACTCAAATACATCTGCATGCCATGGTTCTAAATAGATTGCAAACGCGCCAG 2206 Query 155050 TGCGTTT---TCCTCCTTGATCCACGTGACGCACACAATTATTGTACACGCGCAACAATG 155106 ||||| || || ||||| || | ||| | ||||||| | || | ||||| || Sbjct 2207 GACGTTTACCACCGCCCTGATCTACATAACGTGCCACATTATTGAATACTCTCAACATTG 2266 Query 155107 GTTCCA 155112 || ||| Sbjct 2267 GTACCA 2272 >seq157162 Length=2207 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 64240 ATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTG 64299 ||||| || ||||| ||||| || ||||| || | | || || | ||||| | || Sbjct 592 ATGAAGTGTTGATTCCTTTTGGATATTGTAGTCGGATAGAGTACGTCCATCTTCCAATTG 533 Query 64300 CTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 |||||||| |||| || || || || || || || || |||||||| || || ||||| Sbjct 532 TTTGCCGGCGAAAATTAGACGTTGTTGATCTGGTGGGATACCTTCTTTATCCTGAATTTT 473 Query 64360 TTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGG 64418 ||||| ||| || | || || | || || || | ||| | ||||||||| | Sbjct 472 A-GCTTTGACATTTTCAATGGTGTCCGATGGCTCGACCTCCAAAGTGATGGTCTTGCCAG 414 Query 64419 TCAAAGTTTTTACGAAAATTTGCATT 64444 | | ||||| ||||||||||||||| Sbjct 413 TTAGTGTTTTAACGAAAATTTGCATT 388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 498500020079800