Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_010495.1 Length=45051 Score E Sequences producing significant alignments: (Bits) Value seq183115 125 2e-24 >seq183115 Length=3769 Score = 125 bits (138), Expect = 2e-24 Identities = 204/290 (70%), Gaps = 8/290 (3%) Strand=Plus/Minus Query 32872 TCAGTGGTGTATTTGTCCACGCCGCTGCTG--TCAGTCCACTTACGAGTGCGAAGTTGTC 32929 ||||| || ||||| || || || |||| |||||||| |||||||| | ||| | Sbjct 2673 TCAGTAGTATATTTTTCAACCCC--TGCTTGATCAGTCCATTTACGAGTTTGCAGTGCGC 2616 Query 32930 CTTCTATATAAACCTGCGACCCTTTACGAAGATACTCTCCTGCAACTTCCGCAATTTTTC 32989 |||| ||||||||||| || ||||| ||||||||||| || |||||||| || | || | Sbjct 2615 CTTCAATATAAACCTGAGAGCCTTTGCGAAGATACTCACCAGCAACTTCAGCCAGCTTGC 2556 Query 32990 CGAAGATAACAACTCGATGCCATTCAGTATGTTCTTTCTTTTCTCCTGTTTGCTTGTCTT 33049 | || | ||||| || ||||| || || | ||||| |||| || ||||||||||| Sbjct 2555 CAAACAAAACAATACGGTGCCACTCGGTCTTCTCTTTAGTTTCCCCAGTTTGCTTGTCAC 2496 Query 33050 TCCACTGCTCAGATGTTGCAACAGAAAGGTTCGCAATTGCAGAGCCTGATGCTGAA--TA 33107 ||| || || || || | | | ||| |||| ||| ||| || | | | || Sbjct 2495 GCCAGCTTTCTGAAGTAGCCAGCGTGATGTTGGCAACAGCACCGCC--ATTCGGCATGTA 2438 Query 33108 TTTAACTTCAGGGTCATTTCCGAGAGTGCCGACAATGATTACTTTATTTA 33157 |||||| ||||| | || ||| | || || | |||||||| |||| Sbjct 2437 GCGAACTTCCGGGTCTTGACCCAGATTTCCAACTAAAATTACTTTGTTTA 2388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143728075002270