Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_011357.1 Length=62147 Score E Sequences producing significant alignments: (Bits) Value seq183264 275 2e-69 seq183258 82.4 3e-11 >seq183264 Length=7189 Score = 275 bits (304), Expect = 2e-69 Identities = 473/684 (69%), Gaps = 2/684 (0%) Strand=Plus/Plus Query 1 CATTCCGGAAACGTGAACCAGGGGTTTCATCTGCGGAACATCAATCAACGCCATCAGTTT 60 ||| || |||| || | || |||||||| || || | ||| | | |||| | | ||| Sbjct 862 CATACCTGAAATATGTAACAATGGTTTCATTTGTGGTATATCCACTAGCGCCGTGATTTT 921 Query 61 GTGTTTATTACGATGGGTAAAGAGATAATCAAACAGGCGTGGTTGACGCGTTTTTACCAG 120 | |||| |||||| | || ||| |||| | | || || || | ||||||| || Sbjct 922 ACGCTTATCGCGATGGCTGAATAGAAAATCGTATAATCGAGGCTGTTTCTTTTTTACTAG 981 Query 121 TTTCGCCATCGCAATAGTGGCGTACACATCAGCCATCGCATCGTGGGCGTTGCTATGTTC 180 || ||||| || || |||||||| || || | || |||||||||||||| |||||| Sbjct 982 CTTTGCCATGGCGATGGTGGCGTAGACGTCTGAGATGGCATCGTGGGCGTTATCATGTTC 1041 Query 181 AATACCATTCGCTTTGGTTAAATGCTCAAGGCGAAAGCTCGGTAGACCGTCATCATTTTC 240 | ||||| | ||| || | || | || || | || | | | |||||||| Sbjct 1042 CACGCCATTAATTCGGGTCAAGTTGTCTAAACGGAAATTTGGGAAGCTATTGTCATTTTC 1101 Query 241 AGGCCAGTTTATTCCTTCCGGGCGCAGGGCATAGCAGGCACGCATAACATCCAGTAAATC 300 | ||| | || || || || || || |||| ||||| |||||||| || |||| ||| Sbjct 1102 TGACCATGTAATACCATCTGGCCGTAGAGCATGGCAGGTTCGCATAACGTCTAGTATATC 1161 Query 301 CCAGCGCGAGTTATCATGCTGCCAGCTCCAGGCGTAAGGATCGTAGAAATTACGATAAAA 360 |||||| ||| ||| |||||||||||| || || ||||| || ||||| |||||||| Sbjct 1162 CCAGCGGCTGTTGCCATTCTGCCAGCTCCACGCATAGGGATCATAAAAATTGCGATAAAA 1221 Query 361 AACGTTGCGTGTGACTTCGTCGTCGAAACGCACATTGTTGTAGCCCAGAATACAGGTCTT 420 | ||||| | || ||||| || ||||||| ||||| || |||| || |||||| || Sbjct 1222 TAAATTGCGGCTAACCTCGTCATCAAAACGCAAGTTGTTATAACCCACAACACAGGTATT 1281 Query 421 CGGTACGGTAAAAAGCGAGTGAATACGG-GCGGCAAATGCGGCTTCGTTTTCTCCTTTCG 479 ||| | | || | || |||||| | | |||| | | || || || | Sbjct 1282 GGGTTTGCTGAATAAATTATGGATACGGCGTGTGAAAT-CCACCTCATTAATACCGCGAG 1340 Query 480 CCCGAGCTTCCTGCGGGGTAATACCGGTAATTAATACTGCTCCAGGCTGGGGTAAATAGT 539 | | || |||||| ||||| || || || | |||||| |||| || || | ||||| Sbjct 1341 CGTGTGCGATCTGCGGAGTAATGCCTGTGATCATGACTGCTTCAGGTTGTGGCAGATAGT 1400 Query 540 CATCCGCGGGCTTGCAGTAAAAGACTTCGGGTTCGCCGATGACATTGAATTCGTCATCGG 599 |||| |||||||| |||||||| ||||| ||||| ||||| | ||| || || ||| | Sbjct 1401 CATCTGCGGGCTTACAGTAAAAAACTTCCGGTTCACCGATAATATTAAAATCCATATCAG 1460 Query 600 TGCGAATGGCTGCGAACTGTGCAGGGCGATCTAACGCGGGGTGCGTGCCAAAGGTTTCGT 659 | || || | || || |||||||| || || | || || | ||||| ||||| | Sbjct 1461 TACGGATACCAGCAAATTGTGCAGGACGGTCGAGCGATGGACTTTTACCAAAAGTTTCAT 1520 Query 660 AATCGTGAAAGAGGAAGGTAGGTT 683 |||| | ||| || ||||||| || Sbjct 1521 AATCATAAAAAAGAAAGGTAGATT 1544 >seq183258 Length=7175 Score = 82.4 bits (90), Expect = 3e-11 Identities = 67/79 (85%), Gaps = 2/79 (3%) Strand=Plus/Plus Query 24380 GGCCCTTTAGCTCAGT-GGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAA 24438 ||||| ||||||||| ||| ||||| ||||||||||||||| |||||||||||||| Sbjct 2223 GGCCCCATAGCTCAGTTGGTTAGAGCACGCGACTCATAATCGCTTTGTCGCTGGTTCAAA 2282 Query 24439 TCCAGC-AAGGCCACCAAC 24456 |||||| |||||||||| Sbjct 2283 TCCAGCTGGGGCCACCAAC 2301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 198316197772110