Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq114852 239 4e-58 seq157162 136 4e-27 >seq114852 Length=3422 Score = 239 bits (264), Expect = 4e-58 Identities = 939/1456 (64%), Gaps = 38/1456 (3%) Strand=Plus/Minus Query 123237 ATGCTGCGAGTTTACAATAACGCCGTGCGGCACGTCGACCAGGGCGGC---AAACGCAAA 123293 ||| || |||| | |||||| | | || | || || |||||||| ||||| Sbjct 2264 ATGTTGAGAGTATTCAATAATGTGGCACGTTATGTAGATCAGGGCGGTGGTAAACGTCCT 2205 Query 123294 GGCGCGATGGCGATCTATCTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTA 123353 |||||| | || |||||| ||||||| ||||| | ||||| | || ||||| ||||| Sbjct 2204 GGCGCGTTTGCAATCTATTTAGAACCATGGCATGCAGATGTATTTGAGTTTTTGGATTTA 2145 Query 123354 AAACGCAACATGGGGGCGGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTA 123413 || |||| || ||||||| | || | ||||| || || ||||||||| || Sbjct 2144 AAGAAAAACACTGGCAAGGAAGAACATCGTGCTAGAGATTTATTTTATGCTTTATGGATA 2085 Query 123414 CCCGATTTGTTTATGCGACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGAT 123473 || ||| | |||||| ||| || ||| | | | |||||||| ||||| || | Sbjct 2084 CCAGATCTTTTTATGAAACGTGTTGAAGCTAATGAAGATTGGTCGCTGATGTGCCCTCAC 2025 Query 123474 CGGTGTCCCGGCTTGAGCGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATAC 123533 |||||| || || || || | || || |||| || | || || | |||| Sbjct 2024 AAGTGTCCTGGTCTGCATGAGGTATGGGGTGATGAGTTCGAACAATTATATACTAAATAT 1965 Query 123534 GAGCGCGAAGGCAAACAGGTTAGTCAG---GTTCCGGCAC---GTGATTTGTTCAAATTT 123587 |||| || || || | || | || || |||| || || ||| | Sbjct 1964 GAGCAAGAGGG---ACGCGCTAATAAGACAGTGAAAGCACAAAGTCTTTGGTTTGC---T 1911 Query 123588 ATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAAC 123647 ||||| ||| | ||||| || ||||| || || |||||||| ||||| || || || || Sbjct 1910 ATTATTGAATCGCAAGTAGAGACCGGCACACCATACATGCTGTACAAGGATGCATGTAAT 1851 Query 123648 AGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATT 123707 |||| | ||||| || | || || || |||||||||||| | ||| | |||||| Sbjct 1850 CGGAAGAGTAATCAACAAAATGTTGGCACCATTAAATGTAGTAATTTATGCACAGAAATT 1791 Query 123708 ATCGAATA--CAGCGATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGA 123765 | || || |||| | ||| |||| || || |||||||| || |||||| ||| | Sbjct 1790 GTTGAGTATTCAGCACCG--GATGAAGTAGCTGTTTGTAATTTAGCATCGATT-GCGCTA 1734 Query 123766 A------TCGTTGCGTCGAAAACGGCGCTTTTAATTTCCAAACGCTCAAACGCA-TAACA 123818 | | ||| | | ||| | | | ||||| ||||||| ||| | | | || Sbjct 1733 AATATGTTTGTTACACCCGAAAAGTCA--TACGATTTC-AAACGCTTAAAAGAAGTTACC 1677 Query 123819 AAAACTGTAGTAAAGAATTTGAACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAA 123878 || || ||| ||| | || ||||||||||| || ||| |||||| ||| ||| Sbjct 1676 AAGACCGTAACGCGTAATCTAAATAAAATTATCGAAGTGAATCATTATCCATTGCCCGAA 1617 Query 123879 GCGCGTTTGTCTAATTTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGAC 123938 | || || || | ||| | || |||| | ||| | ||||| || || || Sbjct 1616 ACAAAGAAATCAAACTTCAGACATCGCCCCATCGGTATTGGCGTACAAGGTTTTGCAGAT 1557 Query 123939 GCGTTTGTAATGCTGCGCATGCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAA 123998 || || | | |||| || ||||| ||||| | || | | ||| ||| Sbjct 1556 GCTTTAATCCTTATGCGTTACCCATACGAGAGCGAGCAGGCTGCACTCTTGAATCAACAA 1497 Query 123999 ATAGCCGAAACAATTTATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGC-GAAAATTCA 124057 || ||||||||| || || ||||| ||||| || || || ||| | || ||||| | | Sbjct 1496 ATTTTCGAAACAATGTACTATGGCGCATTGGAAGCTAGTTGTGAATTGGCTGAAAAAT-A 1438 Query 124058 CGGCGCGTACGAAAGTTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACAT 124117 || | || |||| |||| ||| || | ||| |||||| | || || || || Sbjct 1437 TGGTACTTATGAAACATACGAAGGCTCACCTGTTAGCAAAGGTATACTCCAATATGATAT 1378 Query 124118 GTGGAATGCTACACCGACAAATTTGTGGGACTGGAGCGTTTTAAAACAACGCATATCGAC 124177 ||||||| | ||| || || | |||||||||| || || ||| | ||| | Sbjct 1377 GTGGAATAAAAAACCAACCGATCTATGGGACTGGACTGTATTGAAAGAGAAAATAAAGCA 1318 Query 124178 GCACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAAT 124237 ||| || | || ||||| | | |||| |||||| || ||| | ||||||||||| Sbjct 1317 GCATGGCGTACGCAACTCCTTACTTTTGGCACCCATGCCTACTGCATCAACTGCTCAAAT 1258 Query 124238 TTTAGGAAACAACGAATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTT 124297 | | || ||||| ||||| || || || | ||| ||| | || || || || | Sbjct 1257 TATGGGCAACAATGAATCTTTTGAACCTTATACTTCAAATATTTATAATCGTCGCGTACT 1198 Query 124298 AGCCGGCGATTTTCAAGTGATAAATCATCATTTGGTGGACGACTTGGTGGCGTTAAATTT 124357 | | || || |||||||| | |||||||||||| | ||| | | || ||| Sbjct 1197 ATCGGGTGAATTTCAAGTTGTTAATCATCATTTGTTACGCGATCTTACCGAATTGGGTTT 1138 Query 124358 GTACGATGAAAACATGCGCAACGAAATTATTGCGGCCGGTGGCAGCGTGCAGCGCATCGC 124417 || ||||| | ||| | ||||||| | |||| | || | || | Sbjct 1137 GTGGGATGATGAAATGAAAACTAAAATTATAACCAGTCGTGGTTCAATACAAGGTATTGA 1078 Query 124418 TTCGATTCCGGAACACGTCAAGCAACTGTACAAAACCGTGTGGGAAATGAAAAATAAACG 124477 | || ||| || | | |||| ||||| || |||||||| || | |||| | Sbjct 1077 AACAATACCGCAAAAAATACGTGAACTTTACAAGACTGTGTGGGAGAT-ATCGGTAAA-G 1020 Query 124478 ATTA-ATTGAA-ATGGCCGTCGACCGAGGCGCGTACACGGATCAAAGTCAATCTTTTAAC 124535 | || | |||| ||||| | ||| || ||||| | | |||||||| ||||| ||||| Sbjct 1019 ACTACAATGAAGATGGCAGCCGATCGTGGCGCATTTATTGATCAAAGCCAATCGTTTAAT 960 Query 124536 GTGTTTGTAGCGGAACCCACCTACGCCCGCATGACCAGCATACACATGCACGCGTGGAGC 124595 | |||||| ||||| | ||| | | | || |||||| | | |||| Sbjct 959 ATTCATGTAGCTGAACCAAACTATGGCAAACTTACATCTATACACTTTTTTGGTTGGA-A 901 Query 124596 AGC-GGACTCAAAACGGGCATGTATTACTTAAGAACCAAACCGGCGGCCGATGCCATTCA 124654 ||| || |||||||| ||||||||||| ||| | |||||||| || || |||| || || Sbjct 900 AGCGGGGCTCAAAACTGGCATGTATTATTTACGTACCAAACCAGCTGCAAATGCTATACA 841 Query 124655 ATTTACCGTCGACAAA 124670 |||||| || || ||| Sbjct 840 ATTTACAGTTGATAAA 825 >seq157162 Length=2207 Score = 136 bits (150), Expect = 4e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | ||| || | ||| || |||||||||||||||||||| || ||| Sbjct 618 ATACCACCACGTAGACGCAATACCAAATGAAGTGTTGATTCCTTTTGGATATTGTAGTCG 559 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || ||| ||||||||||| || ||| | || | ||||| || || || Sbjct 558 GATAGAGTACGTCCATCTTCCAATTGTTTGCCGGCGAAAATTAGACGTTGTTGATCTGGT 499 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || ||||||||||| |||||||| ||||| ||| | |||||| || | |||| Sbjct 498 GGGATACCTTCTTTATCCTGAATTTTAGCTTTGACATTTTCAATGGTGTCCGATGGCTCG 439 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | ||| | || ||||| ||||| ||||| || ||||||||||| Sbjct 438 ACCTCCAAAGTGATGGTCTTGCCAGTTAGTGTTTTAACGAAAATTTGCAT 389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450967575918200