Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_013055.1 Length=39896 Score E Sequences producing significant alignments: (Bits) Value seq182134 86.0 2e-12 >seq182134 Length=1323 Score = 86.0 bits (94), Expect = 2e-12 Identities = 171/251 (68%), Gaps = 3/251 (1%) Strand=Plus/Minus Query 8786 TTGACTACCTGCAGCTGATGTCGGGTGACGGCGGCGGATCTGAAATGCGGGCCACCGAGG 8845 ||||||| || ||| ||||| || || ||||| |||||| | || | ||| Sbjct 419 TTGACTATCTTCAGTTGATG-CGTGTTCCGGCGCT--ATCTGATAATCGCACGTTAGAGA 363 Query 8846 TCGCCGAAATATCGCGCGCACTCAAACAAATTGCGAAGGAACTCGACGTTCCGATCATCG 8905 |||| ||||| || ||| | || || | | ||||| || || | || ||| | | | Sbjct 362 TCGCTGAAATCTCACGCTCGCTGAAGTCACTAGCGAAAGAGCTGCAAGTGCCGGTGGTAG 303 Query 8906 CGCTGTCGCAGCTTAATCGAGGGCTCGAGAATCGCCCAAACAAGCGGCCCGTCATGTCCG 8965 | ||||||||||||| || ||| || | || || |||| || || || | |||| Sbjct 302 CATTGTCGCAGCTTAACCGCTCGCTGGAACAGCGAGCAGACAAACGTCCGGTTAACTCCG 243 Query 8966 ATCTGCGCGAGTCGGGTGCGATCGAGCAGGATGCCGACGTGATCCTCTTTATCTACCGCG 9025 || |||| || || ||| | || ||||| ||||| || | || | || ||||| |||| Sbjct 242 ATTTGCGTGAATCTGGTTCCATTGAGCAAGATGCTGATTTAATTATGTTCATCTATCGCG 183 Query 9026 ATGAGGTCTAT 9036 |||| || ||| Sbjct 182 ATGAAGTATAT 172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127267980659820