Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq66438 266 3e-66 seq157162 131 2e-25 >seq66438 Length=2923 Score = 266 bits (294), Expect = 3e-66 Identities = 493/723 (68%), Gaps = 17/723 (2%) Strand=Plus/Plus Query 132707 CGATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGC 132766 || |||| ||||| |||| | || ||||| || || || || | |||||| | | Sbjct 887 CGTTCAGCTCGACCAGCAAGCGATCCGCCACAAATTCAATATAATCCGACATTAGCTTAC 946 Query 132767 AATTAAGTCCCAGCAGACGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGA 132826 |||| | || | || | ||| |||| || || || | || ||| || || | Sbjct 947 AATTCATGCCAATCAAATTCACTGGCAAAGCATCTGTTAAGAATTCTTGTTCAATTTTAA 1006 Query 132827 CCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGA 132886 |||| || | | |||||| ||| ||| || |||||| || |||||||| | || Sbjct 1007 CCGCCTCAGCAATGATTTCAATAATACGCTCCCTACTCGGCTTCTGTACCAAATGTTGGA 1066 Query 132887 ACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGA 132946 |||||| |||||||| || ||||| || || || || | || || || || ||| || Sbjct 1067 ACATCAGACAAGCAAAATCACAATGTAAACCTTCATCACGCGAGATTAGCTCATTGGAGA 1126 Query 132947 AAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCG 133006 | |||||||||||||| || || |||||||| | |||||| || | || ||||| || Sbjct 1127 ATGTCAAGCCGGGCATTAGACCACGTTTTTTCAACCAAAAGATCGAAGCAAAACTACCGC 1186 Query 133007 AAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTT 133066 |||||| | ||| || ||||| || || || | | || || || || | || ||| Sbjct 1187 TAAAGAATATGCCTTCAACGGCAGCAAATGCAATGACACGTTCACCAAAATTAGCCGCTT 1246 Query 133067 TGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGA 133126 | | |||||| || ||||| || ||||| || ||| || |||||||| | Sbjct 1247 TTGATGAGATCCATGCTAGTGCCCAATCAGCCTTACGCTTAACGGCAGGGATCGTTTCAA 1306 Query 133127 TGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCG 133186 | || || || | |||| | | | | |||||| || || || | Sbjct 1307 TAGCATTAAATAN------TTTCCATCCTTA-------ATGTAGGTATCAATAAGAATGC 1353 Query 133187 AATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCT 133246 ||||||||| || || || || ||||| || ||||||||||| |||||||| || || | Sbjct 1354 TATACATTTCTGAATGCACATTTTCCATTGCTATTTGAAAGCCATAAAAGCAACGTGCTT 1413 Query 133247 CGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGC 133306 || | || ||||||||| |||||| || || |||||||| || || || || ||| Sbjct 1414 CGGTAATTTGTACTTCTTGACTGAAACGTTCAACTAGATTTTCATTAACAATACCATCGG 1473 Query 133307 TGGCGGCGAAAAAGGCCAGCACGTGCTTGAT--GAAATGGCGCTCGTTGTCGTTCAAGCG 133364 ||||||||| || || | ||||| |||| |||||| || || |||||| | | || Sbjct 1474 AGGCGGCGAAGAAAGCTAAAACGTG--TGATACGAAATGACGTTCATTGTCGGTAAGACG 1531 Query 133365 CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTC 133424 |||| ||| | |||| ||||| || || ||||| || ||||||||||| || || || Sbjct 1532 TACCCAATCGTCCATGTCTTTGGAGAGATCAACCTCTTCTACGGTCCAAAAGGATGCTTC 1591 Query 133425 GGC 133427 ||| Sbjct 1592 GGC 1594 >seq157162 Length=2207 Score = 131 bits (144), Expect = 2e-25 Identities = 159/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| ||||| ||||| || || ||||| |||||||| | || |||||| | | Sbjct 388 AATGCAAATTTTCGTTAAAACACTAACTGGCAAGACCATCACTTTGGAGGTCGAGCCATC 447 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | ||| | |||| ||||| | || ||||| || || || | || || Sbjct 448 GGACACCATTGAAAATGTCAAAGCTAAAATTCAGGATAAAGAAGGTATCCCACCAGATCA 507 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || || |||| ||| |||||||| |||| || | || || || ||||||||| Sbjct 508 ACAACGTCTAATTTTCGCCGGCAAACAATTGGAAGATGGACGTACTCTATCCGACTACAA 567 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||||| | || || |||||||| ||||| Sbjct 568 TATCCAAAAGGAATCAACACTTCATTTGGTATTGCGT 604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499026810332800