Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_014036.1 Length=174436 Score E Sequences producing significant alignments: (Bits) Value seq183044 132 5e-26 >seq183044 Length=3031 Score = 132 bits (146), Expect = 5e-26 Identities = 205/284 (72%), Gaps = 8/284 (3%) Strand=Plus/Minus Query 42874 TTTTCGAAAGCCTGACGCAAAAACAACTTTCTTTCTTCTGGCGTCCGGAAGAAGTCGATC 42933 |||| |||| || | |||||||||||||||| |||||||| || |||||||| ||| Sbjct 2059 TTTTTGAAAAACTAATTGAAAAACAACTTTCTTTTTTCTGGCGCCCAGAAGAAGTTGATG 2000 Query 42934 TGTCTACTGACCGTATGCAGTATGCAAAACTTC-CTGAACATGAAAAAATCATTTTCGAT 42992 | || ||| || || | ||| ||| ||| || ||||||||||| ||||||| Sbjct 1999 TATCACGTGATCGCATCGATTAT-CAAGCCTTGGCTAAACATGAAAAACACATTTTCATC 1941 Query 42993 TCTAACCTACAGTATCAAACCCTGTTAGATACCATTCAGGGACGTGGGCCTAACCTCGCA 43052 ||| | | |||||||| ||||| ||| | || || |||||| | || ||| | ||| Sbjct 1940 AGTAATTTGAAATATCAAACTCTGTTGGATTCTATCCAAGGACGTAGTCCAAACGTAGCA 1881 Query 43053 TTTTTGCCAATTGCATC-CGAT--GTGAGCATGGAAACCTGGATCGAAACGTGGGCGTTT 43109 || | || |||| ||| | || ||| | ||||||| ||| | ||||| ||||| || Sbjct 1880 TTGCTACC-ATTG-ATCTCTATTCCTGAAC-TGGAAACTTGGGTGGAAACCTGGGCATTC 1824 Query 43110 AGTGAAACCATCCACAGCCGTAGTTACACGCATATTCAACGTAA 43153 |||||||||||| ||| ||| ||||||||| |||||| Sbjct 1823 TCTGAAACCATCCATTCCCGATCTTATACGCATATTATACGTAA 1780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556788563407200