Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq78077 255 2e-62 seq154130 163 1e-34 seq157162 159 1e-33 seq182927 140 1e-27 seq32859 111 6e-19 seq134634 107 8e-18 >seq78077 Length=3291 Score = 255 bits (282), Expect = 2e-62 Identities = 278/366 (76%), Gaps = 6/366 (2%) Strand=Plus/Plus Query 451238 TTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAA 451297 ||||| |||||||||||||| |||||||| | ||||||||||||||| || ||| Sbjct 15 TTTGCGCCTGAAGAAATTTCTGCTATGGTTTTGGGTAAAATGAAAGAAACCGCTGAAGCT 74 Query 451298 TATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCA 451357 ||| |||| |||||| | || || ||||||| || ||||||||||||||||| Sbjct 75 TATCTTGGCAAAAAGGTTACTCACGCCGTTGTTACTGTGCCAGCTTATTTCAATGATGCG 134 Query 451358 CAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATT 451417 ||||| ||||| || |||||||| || ||||||||||| ||||| | || |||||| Sbjct 135 CAACGTCAAGCTACAAAAGATGCTGGTGTCATTGCTGGTTTGAATGTAATGCGTATTATT 194 Query 451418 AATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaa 451477 || ||||| |||||||| ||| |||||||||| | ||| || || || || |||| Sbjct 195 AACGAACCCACAGCAGCCGCTATAGCATATGG-TTTGGATAA--GAAGGA---AGGAGAA 248 Query 451478 aaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATT 451537 |||||| |||| ||||| ||||| ||||| || ||| |||| ||| |||| |||| Sbjct 249 AAAAATGTTTTGGTATTCGATTTAGGTGGCGGCACTTTTGATGTTTCACTACTAACAATC 308 Query 451538 GAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGAT 451597 || |||| || || ||||| | | || ||||||||||||||| | || ||||||||| Sbjct 309 GACAATGGTGTTTTCGAAGTCGTGTCCACAAATGGTGATACTCATTTGGGTGGTGAAGAT 368 Query 451598 ATTGAT 451603 | ||| Sbjct 369 TTCGAT 374 Score = 136 bits (150), Expect = 2e-26 Identities = 384/585 (66%), Gaps = 16/585 (3%) Strand=Plus/Plus Query 451896 ATGAAATTGTGCTTGTAGGAGGTTCTACACGAATTCCTAAAATTCAAGATAT-GTT---G 451951 ||||||||||| | || || || || ||||| || || ||| | ||| | | ||| | Sbjct 667 ATGAAATTGTGTTAGTCGGTGGATCAACACGTATACCCAAAGTGCAACAACTTGTTAAAG 726 Query 451952 TCTTCTTATTTTGGAGGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCA 452011 |||||| ||| || ||| ||| || | || | || |||||||||||||||||| Sbjct 727 ACTTCTT----TGGTGGTAAAGAACCATCTCGTGGCATTAACCCTGATGAAGCTGTTGCA 782 Query 452012 TATGGTGCTGCAGTTCAAGCAGCTATTCTAACAGGTTCAGATGATGAAAAATTAGGAGAT 452071 || |||||||| || ||||| | | | || ||| | ||| || | || | | Sbjct 783 TACGGTGCTGCTGTACAAGCTGGTGTGCT------TTCTGGTGAACAAGATACAGATGCT 836 Query 452072 ATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATG 452131 ||| | ||| | ||||| | || | || | || ||||||| | ||||| ||||| Sbjct 837 ATTGTATTACTTGATGTCAATCCATTGACTATGGGCATTGAAACTGTGGGTGGTGTGATG 896 Query 452132 ACTAATTTAATTAAACGAGGAACTTCTATTCCTTGTAAAAAGAGTCAAACATTTAGTACA 452191 || || ||||| ||| || ||| || || || ||||| || ||| Sbjct 897 ACGAAACTAATTCCACGTAACACCGTTATCCCAACGAAGAAATCTCAAATCTTCTCTACT 956 Query 452192 GCAAGTGATAACCAAC-CAGGTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAATGAC 452250 || || ||||||| || | || || |||||||| | |||||| ||||| ||||||| Sbjct 957 GCTTCCGACAACCAACACACG-GTTACAATTCAAGTTTATGAAGGTGAACGCCCAATGAC 1015 Query 452251 ACGAGATAATAATAAACTAGGAGAATTTACTCTTTCAAACATTCCTCCTATGCCAAGGGG 452310 |||||| || || || |||| ||| | ||||| || ||| |||| Sbjct 1016 GAAAGATAACCATTTGCTTGGCAAATTCGATCTGACTGGTATTCCACCAGCGCCTCGGGG 1075 Query 452311 AACTCCTCAAATTGAAATTACCTATGATGTTGATGCAAATGGTATTCTTAATGTGAGTGC 452370 | || ||||||||| | ||| ||| |||| || || || ||||| | || ||||| Sbjct 1076 TATGCCACAAATTGAAGTGTCCTTTGAAATTGACGCTAACGGCATTCTACAAGTAAGTGC 1135 Query 452371 AGTTGAAAAATCATCTGGAAAATCAGAAAAAATTACAATTACTAATGATAAAAACCGTTT 452430 | || || | |||| || ||||| ||| ||||| |||||| | || || || Sbjct 1136 TGAGGACAAGGGAACTGGCAATAAGGAAAAGATTGTTATTACAAATGATCAGAATCGGTT 1195 Query 452431 ATCTAAAGAAGATATTGAAAAAATGGTAGATGAAGCAGAAAAATT 452475 | || ||| |||||||| ||| | ||| || |||||||| Sbjct 1196 AACTCCAGAGGATATTGATCGTATGATTCGTGATGCCGAAAAATT 1240 >seq154130 Length=2691 Score = 163 bits (180), Expect = 1e-34 Identities = 360/535 (67%), Gaps = 6/535 (1%) Strand=Plus/Plus Query 450918 TTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAATGTAG 450977 |||| |||||| | || || |||| || ||||| || || | | || |||| || || | Sbjct 693 TTGGTATTGATTTGGGTACAACCTACTCCTGTGTGGGCGTATTCGAACATGGCAAAGTTG 752 Query 450978 AAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACGGATT 451037 |||| || || |||||||| || || || || || |||| || ||| || || Sbjct 753 AAATCATTGCCAATGACCAGGGTAATCGCACAACCCCATCATATGTTGCTTTCACCGAAA 812 Query 451038 CAGAAAGACTTTTAGGGCAAGCTGCTAAATCAAT--GGTAAATTCAAATGCCAAAAACAC 451095 |||| | || | || | ||||| ||| ||| ||| ||| | | ||| || Sbjct 813 CAGAGCGTCTGATCGGCGATGCTGCCAAA--AATCAGGTTGCCATGAATCCAACAAATAC 870 Query 451096 AGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACAAAAAGA 451155 | | | ||||| |||||||| ||||| |||| | |||||||| | ||||||| ||| Sbjct 871 AATTTTCGATGCCAAACGTTTGATTGGACGTAAATTTGATGATGCCAATGTACAATCAGA 930 Query 451156 GAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATATTCAAGTAAA 451215 | ||| || ||| || || || | | | || || || | ||| || | Sbjct 931 CATGAAACACTGGCCTTTCGAAGTTGTCAGTGTTGATGGTAAACCAAAGATTGGCGTCAC 990 Query 451216 TTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAA 451275 || || | || | || || || || |||||||| ||||| ||||| | || || Sbjct 991 ATACAAGGACGAGAAGAAGACATTCTTCCCAGAAGAAATCTCATCGATGGTATTGACCAA 1050 Query 451276 AATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGT 451335 |||||| ||||| || || || | ||| |||| ||| |||| |||||||| || Sbjct 1051 AATGAAGGAAACCGCTGAGGCTTACTTGGGTAAGACAGTGACTAATGCTGTAATTACAGT 1110 Query 451336 TCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGG-ACATATTGCTG 451394 || ||||| || || ||| | ||||| || || || || ||||| || ||| ||||||| Sbjct 1111 GCCTGCTTACTTTAACGATTCGCAACGTCAGGCGACCAAGGATGCTGGTACA-ATTGCTG 1169 Query 451395 GTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGG 451449 |||| ||||| | || |||||||| || || || || |||||| | || || || Sbjct 1170 GTTTGAATGTATTGCGTATTATTAACGAGCCAACTGCTGCTGCTATTGCGTACGG 1224 >seq157162 Length=2207 Score = 159 bits (176), Expect = 1e-33 Identities = 163/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||||||||||||||| ||||| || || || ||| | || || || |||| Sbjct 388 AATGCAAATTTTCGTTAAAACACTAACTGGCAAGACCATCACTTTGGAGGTCGAGCCATC 447 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || | ||||||| | | ||| |||||||| ||||| ||||| || || || ||||| Sbjct 448 GGACACCATTGAAAATGTCAAAGCTAAAATTCAGGATAAAGAAGGTATCCCACCAGATCA 507 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 ||||||| |||||||| | || |||||| | ||||||||| | ||| | | || || || Sbjct 508 ACAACGTCTAATTTTCGCCGGCAAACAATTGGAAGATGGACGTACTCTATCCGACTACAA 567 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGTATT 391261 ||| | ||||| |||||||||| || ||||| Sbjct 568 TATCCAAAAGGAATCAACACTTCATTTGGTATT 600 >seq182927 Length=2302 Score = 140 bits (154), Expect = 1e-27 Identities = 201/282 (71%), Gaps = 6/282 (2%) Strand=Plus/Minus Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 ||||| ||||||||||| ||||| || || ||| |||||| |||| |||||| ||||| Sbjct 1191 GCAGTTATTACTGTTCCTGCTTACTTTAACAATGAACAACGTGAAGCTACTAAAAATGCA 1132 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441 ||| |||||| || ||||| || |||||||||| ||||| || || ||||| | Sbjct 1131 GGAATTATTGCAGGATTAAAAGTAGAAAGAATTATTAACGAACCAACTGCTGCTGCCATC 1072 Query 451442 GCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTT 451501 || ||||| || || || ||| | | |||| | || |||||||||||||| || Sbjct 1071 GCTTATGGTTTA-GACAAACAAGATA-----AAGATCACAAAATTTTAGTATTTGACTTA 1018 Query 451502 GGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAG 451561 ||||| ||||| ||| ||| || || | | | || ||| |||||||||| Sbjct 1017 GGTGGTGGAACATTTGACGTTTCAGTTCTAGAATTAGCAGGTGGAACATTTGAAGTATTA 958 Query 451562 GCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGAT 451603 |||| | |||||||| | || || ||||| || ||||| Sbjct 957 TCAACTAGTGGTGATAACAAACTTGGTGGTGACGACTTTGAT 916 >seq32859 Length=5301 Score = 111 bits (122), Expect = 6e-19 Identities = 130/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 451274 AAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACT 451333 |||||||| |||||||| ||| ||| | | | || || | |||| || || || Sbjct 3467 AAAATGAAGGAAACAGCGGAAGCTTATCTGAATACGCCCGTAAAAAATGCTGTTATCACC 3408 Query 451334 GTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCT 451393 || || |||||||||||||| |||| || ||||| || |||||||| || || |||||| Sbjct 3407 GTACCTGCTTATTTCAATGACTCACAGCGCCAAGCTACAAAAGATGCTGGCCAAATTGCT 3348 Query 451394 GGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGG 451449 || | ||||| | || | || |||||||||||||| ||||| |||| || || Sbjct 3347 GGACTTAATGTGTTGCGTGTGATCAATGAACCTACAGCCGCTGCATTAGCTTACGG 3292 >seq134634 Length=1945 Score = 107 bits (118), Expect = 8e-18 Identities = 192/278 (69%), Gaps = 2/278 (1%) Strand=Plus/Plus Query 452198 GATAACCAACCAGGTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAATGACACGAGAT 452257 || || ||||| |||||| || || ||||| || || |||||||| ||||| ||| Sbjct 1097 GACAATCAACCGGGTGTATTGATACAGGTGTTCGAGGGTGAACGTGCCATGACGAAGGAT 1156 Query 452258 AATAATAAACTAGGAGAATTTACTCTTTCAAACATTCCTCCTATGCCAAGGGGAACTCCT 452317 || |||| | | || ||||| | ||| || ||| |||| | || || Sbjct 1157 AACAATATATTGGGTAAATTTGAGTTGAGTGGCATACCGCCTGCGCCACGTGGGGTACCA 1216 Query 452318 CAAATTGAAATTACCTATGATGTTGATGCAAATGGTATTCTTAATGTGAGTGCAGTTGAA 452377 ||||| || | |||| ||| ||||||||||||| || | ||||||| || || ||| Sbjct 1217 CAAATCGAGGTGACCTTCGATATTGATGCAAATGGCATATTAAATGTGACGGCGGTGGAA 1276 Query 452378 AAATCATCTGGAAAATCAGAA-AAAATTACAATTACTAATGATAAAAACCGTTTATCTAA 452436 || ||| | || ||| |||| ||||| || ||||| || || || ||| || ||| Sbjct 1277 AAGTCAACGGGCAAA-GAGAATAAAATCACTATTACCAACGACAAGGGCCGCTTGGGTAA 1335 Query 452437 AGAAGATATTGAAAAAATGGTAGATGAAGCAGAAAAAT 452474 |||||||| ||| |||||| |||| || ||| ||| Sbjct 1336 GGAAGATATCGAACGTATGGTAAATGAGGCCGAACAAT 1373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1971078490165860